NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TCEJC06_1000388

Scaffold TCEJC06_1000388


Overview

Basic Information
Taxon OID3300000591 Open in IMG/M
Scaffold IDTCEJC06_1000388 Open in IMG/M
Source Dataset NameGroundwater microbial communities from well in New Jersey, USA, that are chlorine contaminated, sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Berkeley
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5835
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Groundwater Microbial Communities From Well In New Jersey, Usa

Source Dataset Sampling Location
Location NameNew Jersey, USA
CoordinatesLat. (o)39.86Long. (o)-74.34Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030981Metagenome183Y
F096529Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
TCEJC06_10003882F096529GGAGVKRKDFIEGFEPQIVRISGKPKVIGYIKGNTFRSVVKYSKHVLYKREGRPPAIAKEAWVYRNLIRPRCRLWEVFDEERNLLLRTTIAKFDAHCEEWHHNDLVQLLLEEPYWQIERLGPPKLTQGKLF*
TCEJC06_10003883F030981AGGAGMGKVRRCDKRCHTAKGIRCKCWCGGFFHGSAGASNRAALAQGATELLEEHGFKKDATAYVGQEELPMKDLPGAEAR*

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