| Basic Information | |
|---|---|
| Taxon OID | 3300000567 Open in IMG/M |
| Scaffold ID | JGI12270J11330_10021996 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3919 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001432 | Metagenome / Metatranscriptome | 696 | Y |
| F015081 | Metagenome | 257 | Y |
| F071728 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI12270J11330_100219964 | F001432 | GGAGG | MSLEKEFIRDGKRRIIGSVTSGFSDESAVVRDEDNKLSGRTSERYDTTRDDHGNLVSINSADPGLLIGRQ* |
| JGI12270J11330_100219965 | F015081 | AGGTGG | VRHYQCGEEEISVEGLIEEQRKLAHSKNPIERVVGSLCIGAILKEQLVGLPNSTISQLLTDHIWSDLNLLGPESVIVEIASERLIEKCETSQV* |
| JGI12270J11330_100219966 | F071728 | GGAGG | MNRPNRVDLRQVRLRVNGLTFESVRLRRRCGSGDFDILIDDPNVGCFALTAAVPDLELRDEDSEWRQVTLDELKRILADDELAEAAEEPQASAERESFNRLVAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |