NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F14TC_100171480

Scaffold F14TC_100171480


Overview

Basic Information
Taxon OID3300000559 Open in IMG/M
Scaffold IDF14TC_100171480 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9186
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003568Metagenome / Metatranscriptome479Y
F004994Metagenome / Metatranscriptome416Y

Sequences

Protein IDFamilyRBSSequence
F14TC_10017148010F004994N/AMRPGQKSPEERRSRYDLIYTYVRTHLLPYDFALTAEQETELLTSVRSALEETSDEELFSAILRFKVEEAADIKIRRWRNENQLKEQVIRLKEVRDSAEDYVSAFLYGQATPAAIEQLRVRFAIEDSRLLEGELAKQIREWIVAVDDSELLQYDVVTVKDLVFAQLRSWC*
F14TC_10017148013F003568GGAGGMAANMKLCFVLFLTFLLAGCSQNVEVVSSGERLEDSPKPAVDPNAAPLARAGSDKEEDQPKIPPMVKAYFMHMWVAALYSLPENKHPNPNWQSPLKDPVNGRVWCTDCHVSGQVDFSKIPKVRTPMVADFEKDKEFMVGLMKKWVARLNSDEFGAKAKLKGTVTCLTCHATNPELD*
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