NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb48_EPIDRAFT_1028377

Scaffold TBL_comb48_EPIDRAFT_1028377


Overview

Basic Information
Taxon OID3300000439 Open in IMG/M
Scaffold IDTBL_comb48_EPIDRAFT_1028377 Open in IMG/M
Source Dataset NameTrout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2395
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
TBL_comb48_EPIDRAFT_10283773F070810GAGMITVNSVYEISIPWNNQHNEWWNETCISVVEVYGLPGDRWTYHPHEDFMLFRFKSQKDYQLCKILLSDKV*
TBL_comb48_EPIDRAFT_10283775F026556GGAGGMTSALIKLILGIALILIAIAVGPIIGIWALNTLFPQYLNIQLTWQTWLAFNVLFGGSYARLRK*
TBL_comb48_EPIDRAFT_10283777F009462AGGAGMQVEQLHESIKDTYKEMVIKEHEGFRLVLKKHECVAPTGLFALDLEQQHLKDGDIVDACTYNFFMTKEELQTLAYGLTA*
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