NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICChiseqgaiiFebDRAFT_11431592

Scaffold ICChiseqgaiiFebDRAFT_11431592


Overview

Basic Information
Taxon OID3300000363 Open in IMG/M
Scaffold IDICChiseqgaiiFebDRAFT_11431592 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1706
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021615Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
ICChiseqgaiiFebDRAFT_114315921F021615GGAMFGFGRSSKDPLSDVRSAERWLTTLPGGDTLAVQAGVVAELERAAGQGIERTPQRLRAVFHVDAQTGAQRRALIEQYIEHANRSSKIENQLWTALFGLTQAFLITYQSFAREIADRPQSRRWRELLPELLTRQVVHLALDARVRLFRYEQWIPAKWTELHGLMSHACGERIERQLVTLGDGNTTTIEHEYLRALVLQLMNAGSLTARQVEFIWGELDDWCSPLRLTLEPSAANSFFVDLGGREGLRRRKPGALEGRVLFVDTRPLHAVMVQHVVTLEQKIKSEPLSNRTPRRSEQLALFSKLAAQVDPEFKPFTRRGERVTTAGAVDAIVGFQKIASFFREEASQPIPIAETTGESFDSTMDIAVFGRIRDEPTRRNELARRRIGAHAAPGGPWEAKDVSQTGFKLVAPIQVANAVTLGTLVAIHPHGQPRWTLGIIRRMKRTAADRAEIG
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Biomedical Sciences Research Center "Alexander Fleming"
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