NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPfeb10P16500mDRAFT_c1008987

Scaffold LPfeb10P16500mDRAFT_c1008987


Overview

Basic Information
Taxon OID3300000173 Open in IMG/M
Scaffold IDLPfeb10P16500mDRAFT_c1008987 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)987
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005336Metagenome / Metatranscriptome404Y
F090860Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
LPfeb10P16500mDRAFT_10089871F005336AGGMSMPDKTGRRWVELYNIDPKENMHVELEKMLIDLAIKHDPKNKEYLETVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGVVHGYYVRRGAVAVKHPSGRMVGGDSAIKEWNVYDEQVVDKIKIIKVHTFNTKTRETDWIAKSVIPRLGKIPHTHWVGGATEL
LPfeb10P16500mDRAFT_10089872F090860GGAGMKSFKGYLKEDAPAWQSSTSQKIFDFGQISYMQIPLTSSTMEWIFQVQIPRATVFHVTNGIGLDKLKRLQNKKKSISAFFNMDASTMDAGIQGGGGLVVELDANIIMSR*
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