| Basic Information | |
|---|---|
| Taxon OID | 3300000162 Open in IMG/M |
| Scaffold ID | TB03JUN2009H_c000989 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6417 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007848 | Metagenome | 343 | Y |
| F011648 | Metagenome / Metatranscriptome | 288 | Y |
| F053781 | Metagenome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TB03JUN2009H_00098910 | F011648 | AGGAG | MSEQDKDFNSFQEHLERIFKDIEDGVFLSADEIGDLRYACGLPANAKQNPVLKSLFEQFSQTFRNAK* |
| TB03JUN2009H_00098914 | F007848 | GGA | MKDFLGSCLLGTLLGAMVGYGVPAKAQTYQVNNGGTVQIQGNTAQFVNSMGVTTQTATIYPNQVIIQTPNGVTTSVIGTTLYTVPPSPPTPMTVRVLQ* |
| TB03JUN2009H_0009893 | F053781 | GGA | MTLKVTEEFLILKLLCKMYDEALKNANATQMLEISVDIAKSSEKLEQLTVDYINGH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |