NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI48aug10_120mDRAFT_c1009572

Scaffold SI48aug10_120mDRAFT_c1009572


Overview

Basic Information
Taxon OID3300000150 Open in IMG/M
Scaffold IDSI48aug10_120mDRAFT_c1009572 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1866
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 48, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004439Metagenome438Y
F060128Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
SI48aug10_120mDRAFT_10095723F004439GAGMKSFTSYLKEARGSSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAKRKVDGKTMSLIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK*
SI48aug10_120mDRAFT_10095725F060128AGGMTDNFDFGFSAVSTDEFKKTQADTEPAPSTGVSSTEFNELKEKIDSISSLIQALGDKEDTSLFDETGETV
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