NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BS_KBA_SWE12_21mDRAFT_c10050152

Scaffold BS_KBA_SWE12_21mDRAFT_c10050152


Overview

Basic Information
Taxon OID3300000124 Open in IMG/M
Scaffold IDBS_KBA_SWE12_21mDRAFT_c10050152 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameKBA site, Vaertahamnen, Baltic Sea, Sweden
CoordinatesLat. (o)59.363333Long. (o)18.119167Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
BS_KBA_SWE12_21mDRAFT_100501522F006666N/AMNPKKHSEFRKGIAEEVGVHPQLVNDFVSFYYARLRKKLSELEFPRIYVDGLGTFVVRKNKLESSIKRQKSMLGNVVKRTYNGYAKSENINSNILEMENILKQQEEDILNKKLFKLKKNK
BS_KBA_SWE12_21mDRAFT_100501523F004866GAGMAIVTNVDLKLRVDVNKTIKYQILTYCFFNNILISNTDLDFLSELSLISKIEISKFCDLITNKNIFKSPQSARNAISKAEKKNLLIKTGTNKKTITINKNINVQTRGLVLLNYKILGNESQEA*
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