Scaffold TDF_OR_ARG04_113mDRAFT_c1018037

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TDF_OR_ARG04_113mDRAFT_c1018037

Scaffold TDF_OR_ARG04_113mDRAFT_c1018037

Overview

Basic Information
Taxon OID	3300000121 Open in IMG/M
Scaffold ID	TDF_OR_ARG04_113mDRAFT_c1018037 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	836
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	MC site, Ushuaia Bay, Tierra del Fuego, Argentina
Coordinates	Lat. (^o)	-54.810872	Long. (^o)	-68.295525	Alt. (m)		Depth (m)	11.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG04_113mDRAFT_10180371	F016596	N/A	MTKKYSLDKIRKSRNEFEALLRIYGISNLQLCKIIEVNYATSSKFIAEPTRLRFIHAKRLADSIGLNIQDIIDTIVYDLN*
TDF_OR_ARG04_113mDRAFT_10180372	F018080	N/A	MGYLKIEIFKHFLKTYTYIIWEDKHILGFILEDDIMKLLDKKQLVDFYHFDKTIFKVEKSKIHKYITKDD*
TDF_OR_ARG04_113mDRAFT_10180373	F052205	GAG	VNDEWLDNLLDGKPTPITYRQLVTIECNIDQTSLTTRMKSEIINRINDLSQLEAEEIITKLYNNRYEKDTQKQWLKMFRDGVFEDRDF*

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