NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10010406

Scaffold DelMOWin2010_c10010406


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10010406 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5281
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F005026Metagenome / Metatranscriptome414Y
F018706Metagenome233Y
F044468Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1001040610F018706GGAGGMLDRVSVAGMSGTAATFGLSTIDTFLGIAVGAVTLVYMSIKLYQELKK*
DelMOWin2010_100104062F044468N/AMFAIDLSLSAGRPSTASGVPPSFGGPDGVIQTEAQDFLQVEAGQFLAFD*
DelMOWin2010_100104067F001166N/AMATEVGENVQVKANLAFMAKVIAIVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDAPITSDYQQFERLNYLEKELDRLRDKLEE*
DelMOWin2010_100104069F005026N/AMFELLTLFLTGGGSAAMGSILKGVFGMLTDSRQQKYEIEMAREARNNEFAIKFQESLNSGDGGAFTRATRRMLALIGMGTISFVTCITAIFPSVPLLSTTNITGEGKTEILFGLLSFPTEQANLVVTTGHLCLFQTSVVLPMIVGFYFTPGGRR*
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