Scaffold DelMOSpr2010

Basic Information
Taxon OID	3300000116 Open in IMG/M
Scaffold ID	DelMOSpr2010_c10016548 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000116 Open in IMG/M

Scaffold ID

DelMOSpr2010_c10016548 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3673
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3673

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia terpenica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia terpenica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020350	Metagenome / Metatranscriptome	224	N
F026260	Metagenome	198	Y
F031794	Metagenome	181	N
F032652	Metagenome	179	N
F067533	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100165483	F031794	N/A	MSPRKRQYRFCSQCGAKFILPEQSRHRRPRATCSLECQKKLIRLNYRNWSDRELQILSDMAETMPITQLIRAFNQQLNQLGLQKRTQHSIRSKLQKLGFSANVQHGVYTVGMLSKKLGVPFATVSTWTRYHDLNFYRVTKKQSATKYITAKHLRDFARKRPHSFGGIPFIDLYLVLEDQQLTEYIVKNYPHRPGRLPPQPVRCIETRKTYASYVEAGKAFHVCASAIYKSVKFGHPANEHHFEKVENPPNMPRVQTHLNQGHRQQQPI*
DelMOSpr2010_100165484	F020350	N/A	MNPAIGPIELLTIKTNNRLLKPKHHVTNNQVRATLEELSHLLDAAVVREDVNTLDAYSIINCIRLMARTPSDVFESTQP*
DelMOSpr2010_100165486	F067533	N/A	MKTKDFYFHISNTGVRDFVTAYSFVDAKARVWRQYPDDQDRIVWEDTTDPVPDAPTARLFF*
DelMOSpr2010_100165488	F026260	N/A	MKRTFDTASAVKTLRDGLAKGYWTLEDLDTPPPGTQMTFADYRRYCVAQGYVGKEPVYKNLLREAEENQQDDFIL*
DelMOSpr2010_100165489	F032652	GGAG	MPFVVLSPQLVDECKQCAAQRDCNRRSSVDYSSDRTNDKSIWSFMGVLGEVALLRYFRLEIDWEYLSTDKGFCGVDVGEIWEVRAMSKFSNRLFLWSDEAIKSSKLAYAWSKVVVDPDSGMCNICGWAMGYEIAMHGVHAQYDCKRSSYFMDNQKLRRHICPSDDQDQAMKYHLMYRDIENETHF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSpr2010_c10016548

Overview

Ecosystem & Geography

Associated Families

Sequences