NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10016505

Scaffold DelMOSpr2010_c10016505


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10016505 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3678
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025289Metagenome / Metatranscriptome202Y
F041784Metagenome / Metatranscriptome159Y
F044516Metagenome / Metatranscriptome154Y
F095522Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_100165054F041784AGGAGMYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWIDGDDGKRTYKTLPDPTLDGETKNFYSKVCEANGNHNEAGVEVELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFNYETEDEWA*
DelMOSpr2010_100165055F044516GAGMCRDTGYYEPRDDVTNKVVEEMFEKQNKSLMAYYLKMAYQDDQHTYMNDLYWVLQNKFDDVDLEAVESHVEELLLIDDSDRELFEEDE*
DelMOSpr2010_100165057F025289AGGAMDICEERQVSKWSMKQEIIDDLENYDEVTDDIIREICDSLVPVYNSELIDLASHYSGEEYWELWLNNELGGETPLDILRGNVFALYYQIGCEVLEERENEE*
DelMOSpr2010_100165058F095522GAGMEISIKPGTPPEKVFTERSGSKYDEAIKTAIANKGEWFEVASCPVEKRDSMYSTASAIRNGRLATIPQDENITIVCRRVNDSIVMFIKAS*
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