Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10006141 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10006141 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	8369
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (45.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8369

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (45.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F048232	Metagenome	148	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100061411	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQG
DelMOSum2010_1000614111	F091789	N/A	MIELWHYRRPTWKQIKYEWGDLMRSKGLQQINREPPTGYEVAPDLITEQVEGDGFVIYPKGYDPREINHTLSSRASIYGNRYCGTLNSF*
DelMOSum2010_1000614119	F001668	N/A	MATVYLPVQPIEGMDSAERAEALDAETWRLRRPLSLQSPQDVTKYYYPRITHPETGQVAIVGDTTEEVRISPEVDLTNMLALLPEVPQEEKDGLVMFIDANRGGTVAFGQLIPSTSEQLTQEEAEALGWLPDPIEP*
DelMOSum2010_100061414	F072209	AGG	MVRAWFLAELGRLIKFVDATKTIQDNEELSETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILVTVKDLIDLGQIKPPE*
DelMOSum2010_100061415	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIDRNTSAGEEPCMTQSISKMQSHLSFLTFDQIRRALSKLEKDGVIYRQGNGFDRRHTYCLAEMPQGRGEIATTMGQDCHNDVAPLPQVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHDMAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPSGFTPDGLKDFIANG*
DelMOSum2010_100061416	F048232	GGA	MEKPLPYEERVARIMFLREHRRNLLRDYCDETMPKREKNKLRLEIAKVQKALKNLDPDGMFPP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10006141

Overview

Ecosystem & Geography

Associated Families

Sequences