NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10002203

Scaffold DelMOSum2010_c10002203


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10002203 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)15160
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035114Metagenome173Y
F056077Metagenome / Metatranscriptome138Y
F070047Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000220317F035114GAGGMTPSTTNSLTKQTLHQRIDRLLDFTPEVKIQKLEYGSIKVNDTVISNRYGCWICDGVSFYRRKSAVGYALCLLRNDTQKANAICKLDQKLQKVKCDIDVYHYHMRKSNPKRQIVMSNRISADMPVLHTVDAQLTSLLKTIQV*
DelMOSum2010_1000220319F070047GAGMFTTVDMRKLQDRLNAMTEVAEEVAVEAAEIEAAPAVEEASIENSNGDAELAELKDMLGRSGVMGFSV*
DelMOSum2010_100022039F056077AGGAMAVNTDFTGNTKVFNAHGKALAITKLAKNNMTQAELDAAIRFIQQTATVVGIADDTTGGFNTGASDAVHVLSEGIAPAATADFGIGSTGVTSSVVAYFQD*
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