| Basic Information | |
|---|---|
| Taxon OID | 3300000101 Open in IMG/M |
| Scaffold ID | DelMOSum2010_c10001911 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16378 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (83.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004327 | Metagenome / Metatranscriptome | 443 | Y |
| F007414 | Metagenome / Metatranscriptome | 351 | Y |
| F020791 | Metagenome / Metatranscriptome | 222 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2010_100019111 | F007414 | AGGAG | MATMLFXGLVSLLGNPSPSKAFEKEMLTYAKTEYGNDWQYAYHYMLTHKGKGPKMGVTY* |
| DelMOSum2010_1000191125 | F004327 | GGAG | MERTFIKIGTKVLTRHGEAKVTGIELTKDGSKYGIGMDKIFVEDKDRCVFDMDNGHWSYGYQVSVI* |
| DelMOSum2010_1000191134 | F020791 | AGGAGG | MFKAIMFIAIGAVGAYLYMNPGDIDGATEMLKEGVNKGATVVQELTEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |