| Basic Information | |
|---|---|
| Taxon OID | 3300000033 Open in IMG/M |
| Scaffold ID | ICChiseqgaiiDRAFT_c0707809 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2308 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | .1016 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006289 | Metagenome / Metatranscriptome | 377 | Y |
| F042046 | Metagenome / Metatranscriptome | 159 | Y |
| F069418 | Metagenome / Metatranscriptome | 124 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| ICChiseqgaiiDRAFT_07078092 | F006289 | GGAG | VPLLRQLVETLLRAHHRRRLPFLTPAVERRRPRIAAEDYAARHTIXHTLDRKADLRRLAPLXPEAAERYAQLLQXELTGLREVVAALETTAGGRDLQECLAEAREEIARLEIEVEWCAEQRARWPVAPVH* |
| ICChiseqgaiiDRAFT_07078093 | F042046 | GAGG | MRNLFALLAVIGLAGIAFGVLTLLRSAPGQTGQLPFAYENYGGPGTIIAGLLLLGTSLYLRASWQGRD* |
| ICChiseqgaiiDRAFT_07078095 | F069418 | GGAGG | MDQPLSHPATTREFMAMWNAVTAEHLTAKLVAALQQLGQRVPNAPTLVEAQAEALSPLLIHAFQVAAAPEGGVHAAVQFLAEYGAAPTP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |