NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225762110

Scaffold 2225762110


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225762110 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5983
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003459Metagenome485N
F003660Metagenome / Metatranscriptome474Y
F007748Metagenome / Metatranscriptome345N
F011581Metagenome / Metatranscriptome289N
F029089Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
2225179014F007748AGGVNLLETTVIGTVSAIVGGAIAWLTRGRFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIQQLETENATLKSQR
2225179018F011581N/AMTYHSTRPAKALTNALERLMIAISPQDLEQNHALLCEYRRACELLGYDPAKAQWAGVHEVSASQLPADQDHTVCYYPLLNPEE
2225179020F003660N/AMTHETKTKLKAALATGYIVLTTCLGIAFFGRFIIAIITN
2225179022F029089GGAVYKGKHGAAPKPANTNLLDLNDKLGLVPAYDDLTAATLKADFLKLVKKLPADQQERFMKDIDQMTPARFEKGIQFIQNQLSKK
2225179023F003459N/ALERQSLLLLSSIPIPTNNQNSHEPSRNHPQRRTISKQDIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYSQDQQWSDLQASMKAREELLKLAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKAS
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