| Basic Information | |
|---|---|
| Taxon OID | 2222084011 Open in IMG/M |
| Scaffold ID | 2225761901 Open in IMG/M |
| Source Dataset Name | Coastal lagoon microbial communities from Albufera, Spain - Sample 1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University Miguel Hernandez |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8980 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: La Albufera de Valencia | |||||||
| Coordinates | Lat. (o) | 39.330917 | Long. (o) | -0.343 | Alt. (m) | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000847 | Metagenome / Metatranscriptome | 861 | N |
| F001129 | Metagenome / Metatranscriptome | 768 | Y |
| F006105 | Metagenome / Metatranscriptome | 381 | Y |
| F009057 | Metagenome / Metatranscriptome | 323 | Y |
| F011581 | Metagenome / Metatranscriptome | 289 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2225178023 | F011581 | N/A | MTYHSTRPAKALTNALERLMIAXXPQDLEQXHALLCXYRRACELLGYDPAKAQWAGVHEVSASQLPKDEDHTVCYYPLLNPEE |
| 2225178029 | F009057 | N/A | MPTFRKFAFPDGATADKVLGEFLNPLDFAVPVGEIDKAVCVDILFHDTCPEHLAAFVVWPKPCGVHAFSGWEEQYAADYKEFATSPQ |
| 2225178032 | F001129 | N/A | MPTPILQQMLGQGGTMEFVDAAVSGKNYDFLVVNAAATFTTLTGSGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL |
| 2225178033 | F000847 | N/A | MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDSGTLNLVVGVYFSDRLESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLQFQIPYSHSVCEIPS |
| 2225178039 | F006105 | AGG | VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNLTTDFTLLKSANLSSYTERYDKFSLAVGSIETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |