NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199904265

Scaffold 2199904265


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199904265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3320
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F028095Metagenome192Y
F103226Metagenome101N

Sequences

Protein IDFamilyRBSSequence
2200082036F103226N/AMTKTELKKLKELDTFLRERNMQLRGTNIIVRFNANKINCVQLDLDMNWEVGYSNIKELNETPTIKNQYYIEYGKIKQD
2200082040F028095N/AMSEQTYMNLKDAVKRPKLSKEMVINPVNRENKDFKRVVDKYQTWCTDEGGYKDSRVTYENDIIDCLFETDTDGYALATFLKERAYIEPDSELVEILDCVSNVKYSLTKQIIGQWTKENFLEIPSDVIGKKVNAKQGYNKYENHYITTIRPDTYEITVSDKIDKNGGYIVGFENVTFL
2200082042F000962N/AMNIHVPEELKIKYPQYEFRGKQREINNRIVIEAYNPTTEQTFFYSFEEDFFWMAGQIPDYKLQKP
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