NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199786158

Scaffold 2199786158


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199786158 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79841
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (6.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006142Metagenome / Metatranscriptome380Y
F045788Metagenome / Metatranscriptome152Y
F103254Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
2199943512F045788N/AMKHMINSLLLERNVENKNFSDDILYKVGMDNVRNNIEFYSDKTFTCESVIKELFIRGIINYIERNKFPCLEK
2199943519F103254N/AMKIKPIKTLYDYNQAQKYLESIFHKELTEDESNDVAILEILMEEFERKGKVSKEDLVIEPLIDYVFDLVSNASQYEEEGILERGLKLGEEYGELSAEILKLAGYKRSLETKEQINYNILLESTDCLIMIFDIMTQMGFTKEQICDMSEKQVNKWLTNIEIK
2199943527F006142N/AMKRKNKLILEFTEFNMQRMNPDSAAGAIGGVDDPSLSTNAFDKHADAIRQAMSRVNDILYNLAGTSAYKNLRSKLGLESQDIQKMKILRIVKSNSIFYDAYITFVIDDYEYWGVIENVMSPNPEFTSEVFKDFDLYQSKEWIIKIKGLIIKTIKSWLKPEPGMYKLLNDELYCYSTETGKQLKMDKGIEIELIRAHDNKMVVKYETDYYNLVGDNYIYFNWWFEKIEE
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