NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZIGXIF01C2RQ2

Scaffold GZIGXIF01C2RQ2


Overview

Basic Information
Taxon OID2189573002 Open in IMG/M
Scaffold IDGZIGXIF01C2RQ2 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023414Metagenome / Metatranscriptome210Y
F025186Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
FE1_01765940F023414N/AVKQTFLLAAVVAAIVAGTASGAQAKPWLWQCTQIHNVEAQYNCYVRLLKLDVERSGNPARELPRIDRRVTTVGGPL
FE1_01765950F025186N/AVPLDGLNARTYGPSGLEEDIAYCAQEDLLTAVPEVTEATGVAAEIMLR

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