NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_45_length_1320_cov_14.577272

Scaffold NODE_45_length_1320_cov_14.577272


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_45_length_1320_cov_14.577272 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1352
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035718Metagenome / Metatranscriptome171Y
F097111Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_03263080F035718AGGAGGMTRFIQLCASQNNLFALDEEGHVYQYHFNVRTWVKLAVTRDLQHEDGAAS
Iowa-Corn-GraphCirc_03263100F097111GGAGGMGGGVVVGILRERHPERLVLRDGTVVFLTAKQAACEFAIGSSLTVSYTIKKDGTKLADGIWPCA

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