NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OV011_2_1_1_newblercontig12446

Scaffold OV011_2_1_1_newblercontig12446


Overview

Basic Information
Taxon OID2081372001 Open in IMG/M
Scaffold IDOV011_2_1_1_newblercontig12446 Open in IMG/M
Source Dataset NameMarine microbial communities from Deepwater Horizon Oil Spill, sample DHOS OV011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Spill

Source Dataset Sampling Location
Location NameDeepwater Horizon Oil Spill, Gulf of Mexico
CoordinatesLat. (o)28.672222Long. (o)-88.4375Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080654Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
OV011_00104350F080654GGAVVADVISEETAESEPVGKTDLEERQDLWNKIQKFNPEASAMDYYDNSEWDLEKMRSDLKVILEKERFGR
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