NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2014650938

Scaffold 2014650938


Overview

Basic Information
Taxon OID2014642000 Open in IMG/M
Scaffold ID2014650938 Open in IMG/M
Source Dataset NameMarine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 2_Upper_euphotic_70m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1004
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location NameHawaii Ocean Time Series, North Pacific Ocean
CoordinatesLat. (o)22.45Long. (o)-158.0Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F028775Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
2014655125F000999AGGMKIEDLIEQAKEIEDRSDFIVSWFAKKYNKTIFRIGNLNKEGCRTWKKDGKKYMCFWDTVLQRYTTCIDPMITYKKARN
2014655126F028775N/AMVFESGTPDALAIALDNVSKKIGVRGNQDLQALPNFKQ

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