Metagenome / Metatranscriptome Family F102253

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102253
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	74 residues
Representative Sequence	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Number of Associated Samples	66
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.29 %
% of genes near scaffold ends (potentially truncated)	44.55 %
% of genes from short scaffolds (< 2000 bps)	81.19 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (50.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (56.436 % of family members)
Environment Ontology (ENVO)	Unclassified (80.198 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (55.446 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.07% β-sheet: 0.00% Coil/Unstructured: 68.93%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00486	Trans_reg_C	25.74
PF06983	3-dmu-9_3-mt	4.95
PF05494	MlaC	3.96
PF14248	DUF4345	0.99
PF04229	GrpB	0.99
PF14027	Questin_oxidase	0.99
PF07298	NnrU	0.99
PF00355	Rieske	0.99
PF02798	GST_N	0.99
PF16576	HlyD_D23	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	4.95
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	4.95
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	3.96
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.99
COG4094	Uncharacterized membrane protein	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.79 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.96 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.81 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.96 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Calotrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae	1.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Calothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix	1.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
unclassified Calothrix	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → unclassified Calothrix	1.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Calothrix sp. FACHB-156	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → unclassified Calothrix → Calothrix sp. FACHB-156	1.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_100164088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2119	Open in IMG/M
3300010358\|Ga0126370_10724826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300010359\|Ga0126376_12803897	Not Available	537	Open in IMG/M
3300010360\|Ga0126372_12616031	Not Available	556	Open in IMG/M
3300010361\|Ga0126378_11329813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300010361\|Ga0126378_11870733	Not Available	683	Open in IMG/M
3300010376\|Ga0126381_100915249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1263	Open in IMG/M
3300010376\|Ga0126381_104121773	Not Available	564	Open in IMG/M
3300012922\|Ga0137394_10421211	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300016294\|Ga0182041_10047061	All Organisms → cellular organisms → Bacteria → Proteobacteria	2892	Open in IMG/M
3300016294\|Ga0182041_11317187	Not Available	661	Open in IMG/M
3300016294\|Ga0182041_11409052	Not Available	640	Open in IMG/M
3300016319\|Ga0182033_11288474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300016341\|Ga0182035_10002840	All Organisms → cellular organisms → Bacteria	9169	Open in IMG/M
3300016341\|Ga0182035_11131518	Not Available	697	Open in IMG/M
3300016357\|Ga0182032_10063279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2463	Open in IMG/M
3300016357\|Ga0182032_10289821	Not Available	1288	Open in IMG/M
3300016371\|Ga0182034_10114830	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300016404\|Ga0182037_10038786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3096	Open in IMG/M
3300016404\|Ga0182037_11821869	Not Available	544	Open in IMG/M
3300016422\|Ga0182039_11713769	Not Available	575	Open in IMG/M
3300016445\|Ga0182038_10022066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3854	Open in IMG/M
3300016445\|Ga0182038_11495745	Not Available	606	Open in IMG/M
3300018468\|Ga0066662_10303914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1342	Open in IMG/M
3300020582\|Ga0210395_10967691	Not Available	631	Open in IMG/M
3300021444\|Ga0213878_10228738	Not Available	787	Open in IMG/M
3300021560\|Ga0126371_10847544	Not Available	1059	Open in IMG/M
3300021560\|Ga0126371_11633247	Not Available	770	Open in IMG/M
3300029636\|Ga0222749_10028078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2372	Open in IMG/M
3300031474\|Ga0170818_101020194	Not Available	1678	Open in IMG/M
3300031543\|Ga0318516_10132383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300031543\|Ga0318516_10778795	Not Available	541	Open in IMG/M
3300031544\|Ga0318534_10055852	Not Available	2218	Open in IMG/M
3300031545\|Ga0318541_10027152	All Organisms → cellular organisms → Bacteria → Proteobacteria	2804	Open in IMG/M
3300031545\|Ga0318541_10131763	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300031545\|Ga0318541_10261985	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	961	Open in IMG/M
3300031546\|Ga0318538_10009201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4021	Open in IMG/M
3300031546\|Ga0318538_10153108	Not Available	1219	Open in IMG/M
3300031561\|Ga0318528_10034101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2516	Open in IMG/M
3300031561\|Ga0318528_10168227	Not Available	1170	Open in IMG/M
3300031561\|Ga0318528_10337611	Not Available	809	Open in IMG/M
3300031564\|Ga0318573_10208112	Not Available	1038	Open in IMG/M
3300031573\|Ga0310915_10621220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300031573\|Ga0310915_11047905	Not Available	568	Open in IMG/M
3300031679\|Ga0318561_10125988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1364	Open in IMG/M
3300031680\|Ga0318574_10269893	Not Available	986	Open in IMG/M
3300031719\|Ga0306917_11061226	Not Available	632	Open in IMG/M
3300031724\|Ga0318500_10014225	All Organisms → cellular organisms → Bacteria → Proteobacteria	2883	Open in IMG/M
3300031744\|Ga0306918_10234652	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300031747\|Ga0318502_10941520	Not Available	526	Open in IMG/M
3300031748\|Ga0318492_10350424	Not Available	772	Open in IMG/M
3300031763\|Ga0318537_10135318	Not Available	917	Open in IMG/M
3300031763\|Ga0318537_10173941	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300031768\|Ga0318509_10212838	Not Available	1076	Open in IMG/M
3300031768\|Ga0318509_10464225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300031770\|Ga0318521_10104406	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300031770\|Ga0318521_10926681	Not Available	533	Open in IMG/M
3300031771\|Ga0318546_10092047	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300031771\|Ga0318546_10770450	Not Available	677	Open in IMG/M
3300031777\|Ga0318543_10058765	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1586	Open in IMG/M
3300031795\|Ga0318557_10123495	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300031796\|Ga0318576_10149909	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300031796\|Ga0318576_10234606	Not Available	865	Open in IMG/M
3300031797\|Ga0318550_10053484	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300031805\|Ga0318497_10705989	Not Available	565	Open in IMG/M
3300031833\|Ga0310917_11049730	Not Available	545	Open in IMG/M
3300031890\|Ga0306925_10202410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2141	Open in IMG/M
3300031890\|Ga0306925_10782084	Not Available	992	Open in IMG/M
3300031890\|Ga0306925_11599600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300031896\|Ga0318551_10254417	Not Available	982	Open in IMG/M
3300031910\|Ga0306923_10141909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2738	Open in IMG/M
3300031910\|Ga0306923_10576557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → unclassified Calothrix → Calothrix sp. FACHB-156	1265	Open in IMG/M
3300031910\|Ga0306923_11132455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	841	Open in IMG/M
3300031941\|Ga0310912_10867071	Not Available	696	Open in IMG/M
3300031942\|Ga0310916_10286190	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300031942\|Ga0310916_10400682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1168	Open in IMG/M
3300031942\|Ga0310916_11237488	Not Available	616	Open in IMG/M
3300031945\|Ga0310913_10110621	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300031945\|Ga0310913_11114852	Not Available	551	Open in IMG/M
3300031946\|Ga0310910_10050132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2938	Open in IMG/M
3300031946\|Ga0310910_10963582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300031954\|Ga0306926_10633928	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300031981\|Ga0318531_10202263	Not Available	895	Open in IMG/M
3300031981\|Ga0318531_10239406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300032039\|Ga0318559_10157340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → unclassified Calothrix → Calothrix sp. FACHB-156	1034	Open in IMG/M
3300032039\|Ga0318559_10415979	Not Available	627	Open in IMG/M
3300032042\|Ga0318545_10057788	Not Available	1321	Open in IMG/M
3300032043\|Ga0318556_10550222	Not Available	603	Open in IMG/M
3300032051\|Ga0318532_10204023	Not Available	702	Open in IMG/M
3300032059\|Ga0318533_10568664	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300032063\|Ga0318504_10098139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1309	Open in IMG/M
3300032063\|Ga0318504_10258858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300032066\|Ga0318514_10331917	Not Available	805	Open in IMG/M
3300032076\|Ga0306924_10346804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1703	Open in IMG/M
3300032076\|Ga0306924_10834718	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300032090\|Ga0318518_10454669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300032261\|Ga0306920_104020665	Not Available	533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.01%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.01%
Freshwater	Environmental → Aquatic → Freshwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	98.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Loam	Environmental → Terrestrial → Soil → Loam	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	83.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	56.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1001640884	3300004092	Bog Forest Soil	MIMSEYEERFRSPTPSLHQTFAATRGPDRGRRRSRRLWVAAAVVGMMTMTCKVASHHTVHSGTGNGSEGWKSSVR*
Ga0066388_1015704641	3300005332	Tropical Forest Soil	MTVSEYEDRFRSSTPSLHQIFAAAWGPNLERQRGRRLWGAAALVAVITMTCEVASHHAPHFDTGNGSHIWESCIGGNPTDHAP*
Ga0126370_107248262	3300010358	Tropical Forest Soil	MSTSEYEDRFRPLTPSLHQIFTAARGPKRERRGNLRLWVAAALVGVMTMTCKVASHHVVHSGAVDGSQVWAPGTR*
Ga0126376_128038971	3300010359	Tropical Forest Soil	MTISEYEERFRSPTPSLHQTFAATHRPNRGRRWSRRLWVAAALVGVMTTTCKITSHHTLYSAMSNAFLMWKSISDDSRGKG
Ga0126372_126160311	3300010360	Tropical Forest Soil	IMTISEYEERFRSPTPSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTFKVASHHTVQSKTGNGSQIWKCDIG*
Ga0126378_113298131	3300010361	Tropical Forest Soil	MTISEYEERFRSPTPSLYQIFAATRGPERERRRSQRLWVAAALVGVMTMTYKVASHHTVHSKTSNGS
Ga0126378_118707331	3300010361	Tropical Forest Soil	MTMSEYEDRFRSPTPSLHQIFAAARGPNRERRRSRRLWMAAALVGVMTMTCKVASHHTNHSETGNGSQVGKSGIR*
Ga0126381_1009152492	3300010376	Tropical Forest Soil	MIASEYEERFRCPKPSLHQIFAETQGSKRGQRRSLRLWAAAAFVGVMTMTCNVVSHHTIHREAGNGSQVGNEGGRLPWP*
Ga0126381_1024928571	3300010376	Tropical Forest Soil	MTVNEYEDRFRSSTPSLHQIFAAARGPNREQQRGRRLWGAAALVAVITMTCEVASHHTPHIDTGNGLHVWESCIGGNPTDHAQP*
Ga0126381_1041217731	3300010376	Tropical Forest Soil	MMMSEYEERFRSPTPSLHQIFAAARGHNPERPQSRRIWVAVALVGVMLMTCKVASHHIVYSGTDYGSQI
Ga0137394_104212111	3300012922	Vadose Zone Soil	MTVSEYEERFRSPALSLHQTLAANRGPVQGRQRGRYLWLAAALVGVMTMTCQVASHRAGHAEAGDGSQALKSSIREPAR*
Ga0126369_103771411	3300012971	Tropical Forest Soil	MTVSEYEDRFRSSTPSLHQISAAARGPNRERQRGRRLWGAAALVGVITMTCEVASHHTPHIDTGNGSHVWESCIGGNPTDHAQP*
Ga0182041_100470614	3300016294	Soil	MTVSEYEERFRSPMPSLHQIFAAIRGPSWGRRSRRLWVAAALVGVMTMTCRVASHDTVHSETGTGAQVWKPSFR
Ga0182041_113171871	3300016294	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVPSHHTIHSGTGDRSQVWEPDTR
Ga0182041_114090521	3300016294	Soil	MIMSEYEERFHPPKPSLHQIFTAARGRRRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDRSLVWEPDAR
Ga0182033_112884742	3300016319	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTGDRS
Ga0182035_1000284010	3300016341	Soil	MTISEYEERFRSPTQSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0182035_111315182	3300016341	Soil	EERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVPSHHTIHSGTGDRSQVWEPDTR
Ga0182032_100632791	3300016357	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVTSHHTIHSGTGDRSQIWEPDTR
Ga0182032_102898211	3300016357	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGT
Ga0182034_101148302	3300016371	Soil	MTVSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0182037_100387862	3300016404	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWVPDTR
Ga0182037_118218692	3300016404	Soil	MSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGS
Ga0182039_117137691	3300016422	Soil	GSKLPDRREVIMIMSEYEERFHPPKPSLHQIFTAARGRRRERRGSLRLWVAAALVGVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0182038_100220662	3300016445	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWEPDTR
Ga0182038_114957451	3300016445	Soil	EVIMSMSEYEERFRSLTPSLHQIFAAARGRKRERRGSLPLWVAAALVAVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0066662_103039142	3300018468	Grasslands Soil	MTVREYEERFRCPTPSLHQTFAATRGPNRGRRSRYFWVAAALVSAITLTCKVASHHAIHSETGNASHTWKSSL
Ga0210395_109676911	3300020582	Soil	MSMSEYEERFRSSTPSLHQIFAAARGANRQRRDSRRLWVAAALVGVLMMTCKIASHHTVHSGTDNGSQVWKSGIQ
Ga0213878_102287381	3300021444	Bulk Soil	RVIMTMREYEERFRSPTPSPHQVFAAARGTNRERRGSLRLWAAAALVGVMTMTCKVASHHTVNSGTGGGSQVSESGTR
Ga0126371_108475442	3300021560	Tropical Forest Soil	RREVIMIMSEYEERFHPPKPSLHQIFTAARGRRRERRASLRLWVAAALVGVMTMTCKVASHHTVHSGTVDDSQIWDSGTR
Ga0126371_116332471	3300021560	Tropical Forest Soil	MTMSEYEERFRSPTPSLHQIFAAARGPNRARRRSRGLWMTAALVGVMAMTCKVALHHTNHGETGNRSQVGKSNIQ
Ga0126371_116519932	3300021560	Tropical Forest Soil	MTVSEYEDRFRSSTPSLHQIFAAAWGPNLERQRGRRLWGAAALVAVITMTCEVASHHAPHIDTGNGSHIWESCIGGNPTDHAQP
Ga0222749_100280783	3300029636	Soil	MTINEYEERFRSPTPSLHQIFAATRGPNRGARRSRRFWVAAVLVGAMTLTSKVVSHHTIHSGTGNCPQVWMSNI
Ga0170818_1010201942	3300031474	Forest Soil	MSMSEYEERFRSSTPSLHQIFAAARGANRQRRDSRRLWAAAASVGVLMMTCKIASHHTVHSGTDNGSQVWKSGIQ
Ga0318516_101323832	3300031543	Soil	MTISEYEERFRSPTPSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0318516_107787951	3300031543	Soil	MSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGSQVWDSRTR
Ga0318534_100558523	3300031544	Soil	MLMSEYEERFRPPTPSLHQIIAAARPPNRGRRGTLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGSPIWKSDTR
Ga0318541_100271524	3300031545	Soil	MTVSEYEERFRSPMPSLLQIFAAIRGPSWGRRSRRLWVAAALVGVMTMTCRVASHHTVHSETGTGAQVWKPSFR
Ga0318541_101317631	3300031545	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWVPDTR
Ga0318541_102619853	3300031545	Soil	MTMSEYEERFRSPTPSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0318538_100092012	3300031546	Soil	MTMSEYEERFRSPTLSLHQTFAATRGPDRGRRRSRRFCVAAALVSVMTLTCKVASHHTVHSGTANGSQVWKSNLSDRLGDK
Ga0318538_101531082	3300031546	Soil	MIMSEYEELFRSPAPSLHQTFAATRGPNRERQRSRRLWVAAALVGVMTMTCKVASHHAVHSATGNDSEGRSSSVR
Ga0318528_100341011	3300031561	Soil	MSMSEYEERFRPQTPSLHQVFAAARGPKSERRGNLRLWVAAALVGVMTMTCKVASHHTVHRGTVDGSQVWDSETR
Ga0318528_101682272	3300031561	Soil	MSMSEYEERFHPPTPSLHQIFTAARGPKRERRGSLPLWVTVALVGVMTMTCKVTSHHTVHSGTGDGSQVWDSGTR
Ga0318528_103376111	3300031561	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWEPDTR
Ga0318573_102081122	3300031564	Soil	LPDRGGVIMSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGSQVWDSRTR
Ga0310915_106212202	3300031573	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVPSHHTIHSGTGDRSQV
Ga0310915_110479051	3300031573	Soil	MTMSEYEERFRPPTQSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0318561_101259881	3300031679	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTGDRSLVWEPDAR
Ga0318574_102698931	3300031680	Soil	MSMSEYEERFRPQTPSLHQIFATARGPKSERWGNLRLWVAAALVGVMTMTCKVASHHTVHRGAVDGSQVWDSGTR
Ga0306917_110612261	3300031719	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0318500_100142255	3300031724	Soil	MTVSEYEERFRSPMPSLLQIFAAIRGSSWGRRGRRLWVAAALVGVMTMTCRVASHDTVHSETGTGAQVWKPSFR
Ga0306918_102346522	3300031744	Soil	MTISEYEERFRSPTPLHQIFAATRGPELGRRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0318502_109415201	3300031747	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0318492_103504241	3300031748	Soil	REVIMTMSEYEERFRSPTLSLHQTFAATRGPDRGRRRSRRFCVAAALVSVMTLTCKVASHHTVHSGTANGSQVWKSNLSDRLGDK
Ga0318537_101353181	3300031763	Soil	MSMSEYEERFRPQTPSLHQVFAAARGPKSERRGNLRLWVAAALVGVMTMTCKVASHHTVHRGAVDGSQVWDSGTR
Ga0318537_101739412	3300031763	Soil	MTMSEYEERFRRPTPSLHQTFAATRGTNRERRGSLPLWLAAALVGVMTMTCKVTSHHTIHSGTG
Ga0318509_102128381	3300031768	Soil	MIMSEYEELFRSPAPSLHQTFAATRGPNRERQRSRRLWVAAALVGVMTMTCKVASHHTIHSGTGNGSQVWKSSVR
Ga0318509_104642252	3300031768	Soil	MSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGT
Ga0318521_101044062	3300031770	Soil	MLMSEYEERFRPPTPSLHQIIAAARPPNRGRRGTLRLWVAAALVGVMTMTCKVASHHTVHSG
Ga0318521_109266811	3300031770	Soil	IPEGSSLPDRREVIMSMSEYEERFRSLTPSLHQIFAAARGPKREPRGSLPLWVAAALVAVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0318546_100920471	3300031771	Soil	MIMSEYEELFRSPAPSLHQTFAATRGPNRERQRSRRLWVAAALVGVMTMTCKVASHHAVHSATGNDSEGRSSGVR
Ga0318546_107704501	3300031771	Soil	VIMSMSEYEERFRSLTPSLHQIFAAARGRKRERRGSLPLWVAAALVAVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0318543_100587651	3300031777	Soil	PDRREVIMTISEYEERFRSPTPSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0318557_101234951	3300031795	Soil	MTMSEYEERFRSPTLSLHQTFAATRGPDRGRRRSRRFCVAAALVSVMTLTCKVASHHTVHSGTANGSQVWKSNLSD
Ga0318576_101499093	3300031796	Soil	VIMTMSEYEERFRSPTLSLHQTFAATRGPDRGRRRSRRFCVAAALVSVMTLTCKVASHHTVHSGTANGSQVWKSNLSDRLGDK
Ga0318576_102346061	3300031796	Soil	MIMSEYEERFHPPKPSLHQIFTAARGRRRERRGSLRLWVAAALVGVMTMTCKVASHHSVHSGTVDGSQIWDSGTR
Ga0318550_100534841	3300031797	Soil	MTVSEYEERLRSPMPSLLQIFAAIRGPSWGRRSRRLWVAAALVGVMTMTCRVASHHTVHSETGTGAQVWKPSFR
Ga0318497_107059891	3300031805	Soil	MRLTGRLDLAESRGIIMLMSEYEERFRPPTPSLHQIIAAARPPNRGRRGTLRLWVAAALVGVMTMTCKVASHHTVH
Ga0310917_110497301	3300031833	Soil	MSMSEYEERFRPQTPSLHQIFATARGPKSERWGNLRLWVAAALVGVMTMTCKVASHHTVHRGAVDGSQVWD
Ga0306925_102024101	3300031890	Soil	MTVSEYEERFRSPMPSLLQIFAAIRGPSWGRRCRRLWVAAALVGVMTMTCRVASHHTVHSETGTGAQVWKPSFR
Ga0306925_107820842	3300031890	Soil	MSMSEYEERFRSLTPSLHQIFAAARGRKRERRGSLPLWVAAALVAVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0306925_115996002	3300031890	Soil	MPDLPDRREAIMTMSEYEERFRSSTPSLHQILAVTRGPNRGRRRSRRLWIAAALVGFVTTTCKIASHHTVHIGTGNG
Ga0318551_102544171	3300031896	Soil	PEASRLPDRGGVIMSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGSQVWDSRTR
Ga0306923_101419094	3300031910	Soil	MTVSEYEERFRSPMPSLLQIFAAIRGPSWGRRSRRLWVAAALVGVMTMTCRVASHDTVHSETGTGAQVWKPSFR
Ga0306923_105765571	3300031910	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0306923_111324551	3300031910	Soil	MSMSEYEERFRSLTPSLHQIFAAARGRKRERRGSLPLWVAAALVGVMTMTCKVTSHHTIHSGTGDGSQVWDS
Ga0310912_108670711	3300031941	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVTSHHTVHSGTGDRSLVWEPDAR
Ga0310916_102861902	3300031942	Soil	MSSRLPDRGGVIMSMSEYEERFRSPTPSWHQTFAAARGPNRERRGSLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGSQVWDSRTR
Ga0310916_104006822	3300031942	Soil	GRREVIMSMSEYEERFRSLTPSLHQIFAAARGRKRERRGSLPLWVAAALVGVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0310916_112374881	3300031942	Soil	SQSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0310913_101106211	3300031945	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVPSHHTIHSGTGDRSQVWEPDTR
Ga0310913_111148522	3300031945	Soil	LTPSLHQIFAAARGRKRERRGSLPLWVAAALVAVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0310910_100501323	3300031946	Soil	MSMSEYEERFRPQTPSLHQIFATARGPKSERWGNLRLWVAAALVGEMTMTCKVASHHTVHRGAVDGSQVWDSGTR
Ga0310910_109635822	3300031946	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVW
Ga0306926_106339282	3300031954	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTGDRSLVWEPDAR
Ga0318531_102022632	3300031981	Soil	RPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWVPDTR
Ga0318531_102394063	3300031981	Soil	ILPDRREVIMTISEYEERFRSPTPSLYQIFAATRGPERERRRSQRFWVAAALVGVMTMTYKVASHHTVHSKTSNGSQIWKCDIG
Ga0318559_101573401	3300032039	Soil	SRVIMTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRSQVWVPDTR
Ga0318559_104159791	3300032039	Soil	MTVSEYEERFRSPMPSLLQIFAAIRGSSWGRRGRRLWVAAALVGVMTMTCRVASHHTVHSETGTGAQVWKPSFR
Ga0318545_100577881	3300032042	Soil	MTMSEYEERFRRPTPSLHQIFAAARGTNRERRGSLPLWLAAALVGVMTMTCKVTSHHTIHSGTGD
Ga0318556_105502221	3300032043	Soil	MTVSEYEERFRSPMPSLHQIFAAIRGPSWRRRSRRLWVAAALVGVMTMTCRVASHHTVHSETGTGAQVWKP
Ga0318532_102040231	3300032051	Soil	MSMSEYEERFRPQTPSLHQIFATARGPKSERWGNLRLWVAAALVGVMTMTCKVASHHTVHRGA
Ga0318533_105686642	3300032059	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRSQ
Ga0318504_100981393	3300032063	Soil	LLDRGEVIMSMSEYEERFRPQTPSLHQVFAAARGPKSERRGNLRLWVAAALVGVMTMTCKVASHHTVHRGTVDGSQVWDSETR
Ga0318504_102588581	3300032063	Soil	MTMSEYEERFRSPTLSLHQTFAATRGPDRGRRRSRRFCVAAALVSVMTLTCKVASHHTVHSGT
Ga0318514_103319172	3300032066	Soil	MSMSEYEERFRPQTPSLHQIFATARGPKSERWGNLRLWVAAALVGVMTMTCKVASHHTVHSGTGDGS
Ga0306924_103468042	3300032076	Soil	MSMSEYEERFRSLTPSLHQIFAAARGPKREPRGSLPLWVAAALVGVMTMTCKVTSHHTIHSGTGDGSQVWDSGTR
Ga0306924_108347183	3300032076	Soil	ERFRPPTPSLHQIFAAARGTNRERRGSLPLWVAAALVGVMTMTCKVTSHHTVHSGTGDRSQVWEPDTR
Ga0318518_104546692	3300032090	Soil	MPDLPDRREAIMTMSEYEERFRSSTPSLHQTLAVTRGFDRGRRWSRRLWVAAALAGVMTTTCKIASHHTAHSG
Ga0306920_1040206651	3300032261	Soil	MTMSEYEERFRPPTPSLHQIFAAARGTNRERRGSLPLWMAAALVGVMTMTCKVTSHHTVHSGTDDRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102253

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences