Metagenome / Metatranscriptome Family F099649

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099649
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	62 residues
Representative Sequence	ALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Number of Associated Samples	94
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.330 % of family members)
Environment Ontology (ENVO)	Unclassified (33.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.456 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.52% β-sheet: 0.00% Coil/Unstructured: 34.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13413	HTH_25	79.61
PF00994	MoCF_biosynth	5.83
PF13464	DUF4115	3.88
PF00154	RecA	2.91
PF02834	LigT_PEase	2.91
PF02464	CinA	0.97
PF02653	BPD_transp_2	0.97
PF13683	rve_3	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	2.91
COG1514	RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase)	Translation, ribosomal structure and biogenesis [J]	2.91
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.20 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	93.20 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	70.87 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.88 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	70.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.94 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	70.87 %
Unclassified	root	N/A	1.94 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	70.87 %
Unclassified	root	N/A	1.94 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0997125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300001526\|A105W1_1160373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300001536\|A1565W1_10340261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300001686\|C688J18823_10367018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	935	Open in IMG/M
3300001978\|JGI24747J21853_1041226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300002077\|JGI24744J21845_10011584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1802	Open in IMG/M
3300002560\|JGI25383J37093_10158423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	597	Open in IMG/M
3300002568\|C688J35102_119498441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300002568\|C688J35102_120275079	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300004081\|Ga0063454_101329107	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300004114\|Ga0062593_100166241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1701	Open in IMG/M
3300004114\|Ga0062593_102384318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300004479\|Ga0062595_101167612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300004479\|Ga0062595_101789420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300004643\|Ga0062591_101038867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300005175\|Ga0066673_10286719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300005184\|Ga0066671_10429395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300005364\|Ga0070673_101494150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300005435\|Ga0070714_102293836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300005468\|Ga0070707_100493941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1185	Open in IMG/M
3300005546\|Ga0070696_100714190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	818	Open in IMG/M
3300005553\|Ga0066695_10425335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	820	Open in IMG/M
3300005556\|Ga0066707_10640994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300006031\|Ga0066651_10019802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2880	Open in IMG/M
3300006046\|Ga0066652_100361823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1309	Open in IMG/M
3300006175\|Ga0070712_100579663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300006755\|Ga0079222_10438475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	928	Open in IMG/M
3300006904\|Ga0075424_102246986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300009090\|Ga0099827_11384022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300009098\|Ga0105245_12680658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300009162\|Ga0075423_12034179	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300009810\|Ga0105088_1056417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300010039\|Ga0126309_11277066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300010358\|Ga0126370_11949014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300010373\|Ga0134128_12603295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300010399\|Ga0134127_12179036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300011107\|Ga0151490_1248245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	916	Open in IMG/M
3300012189\|Ga0137388_10704022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	938	Open in IMG/M
3300012200\|Ga0137382_10844144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300012201\|Ga0137365_10897346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	647	Open in IMG/M
3300012203\|Ga0137399_10030027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3727	Open in IMG/M
3300012204\|Ga0137374_11095785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300012211\|Ga0137377_10504912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1147	Open in IMG/M
3300012211\|Ga0137377_11426021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300012353\|Ga0137367_10557744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	804	Open in IMG/M
3300012354\|Ga0137366_11100326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300012355\|Ga0137369_10325308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1131	Open in IMG/M
3300012358\|Ga0137368_10418198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	877	Open in IMG/M
3300012469\|Ga0150984_112589902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300012469\|Ga0150984_121309225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	832	Open in IMG/M
3300012958\|Ga0164299_11267909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300013102\|Ga0157371_10517028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	883	Open in IMG/M
3300013296\|Ga0157374_12792034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300015241\|Ga0137418_11030156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592	Open in IMG/M
3300017997\|Ga0184610_1062002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1127	Open in IMG/M
3300018027\|Ga0184605_10289069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300018054\|Ga0184621_10061426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1276	Open in IMG/M
3300018061\|Ga0184619_10098017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300018433\|Ga0066667_10051118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2496	Open in IMG/M
3300018468\|Ga0066662_11175850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300018468\|Ga0066662_11417953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	719	Open in IMG/M
3300020001\|Ga0193731_1130512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300021073\|Ga0210378_10371717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300021510\|Ga0222621_1010685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1735	Open in IMG/M
3300024347\|Ga0179591_1133950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	4100	Open in IMG/M
3300025898\|Ga0207692_10229362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1104	Open in IMG/M
3300025904\|Ga0207647_10105910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1665	Open in IMG/M
3300025907\|Ga0207645_11031215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300025911\|Ga0207654_10345071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300025915\|Ga0207693_10226439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1469	Open in IMG/M
3300025915\|Ga0207693_11433747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300025917\|Ga0207660_10179337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1644	Open in IMG/M
3300025920\|Ga0207649_10808363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	732	Open in IMG/M
3300025929\|Ga0207664_11702635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300026295\|Ga0209234_1215347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300026524\|Ga0209690_1024917	All Organisms → cellular organisms → Bacteria	2961	Open in IMG/M
3300027277\|Ga0209846_1032527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	829	Open in IMG/M
3300027909\|Ga0209382_10060961	All Organisms → cellular organisms → Bacteria	4473	Open in IMG/M
3300028705\|Ga0307276_10033711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1074	Open in IMG/M
3300028713\|Ga0307303_10025808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1152	Open in IMG/M
3300028714\|Ga0307309_10001277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3511	Open in IMG/M
3300028715\|Ga0307313_10239045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300028717\|Ga0307298_10021767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1666	Open in IMG/M
3300028718\|Ga0307307_10231591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300028719\|Ga0307301_10007219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3115	Open in IMG/M
3300028768\|Ga0307280_10040527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1427	Open in IMG/M
3300028782\|Ga0307306_10200173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300028784\|Ga0307282_10153411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1091	Open in IMG/M
3300028793\|Ga0307299_10145326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
3300028799\|Ga0307284_10030783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1793	Open in IMG/M
3300028799\|Ga0307284_10360224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300028819\|Ga0307296_10816014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300028824\|Ga0307310_10008224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3969	Open in IMG/M
3300028828\|Ga0307312_10066390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2182	Open in IMG/M
3300028878\|Ga0307278_10220264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300028880\|Ga0307300_10009029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2525	Open in IMG/M
3300028881\|Ga0307277_10115500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1147	Open in IMG/M
3300028881\|Ga0307277_10168419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	954	Open in IMG/M
3300028885\|Ga0307304_10248799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	773	Open in IMG/M
3300030511\|Ga0268241_10055561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	857	Open in IMG/M
3300031544\|Ga0318534_10450112	Not Available	738	Open in IMG/M
3300032180\|Ga0307471_102978942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.44%
Host-Associated	Host-Associated	14.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.61%
Plants	Host-Associated → Plants	14.56%
Aquatic	Environmental → Aquatic	5.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.65%
Sediment	Environmental → Aquatic → Sediment	4.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.08%
Loam	Environmental → Terrestrial → Soil → Loam	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Sand	Environmental → Terrestrial → Soil → Sand	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001526	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-5cm-1A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09971252	2228664022	Soil	ENLRWLRLREGGTGVATTAVILAAIVICLALTAALSIGFYELVLVYQHSR
A105W1_11603731	3300001526	Permafrost	RRNLKWLQLREGGTAIATLAVLVGALTLCLSLAAALSVGFYELFVVYQHSG*
A1565W1_103402611	3300001536	Permafrost	AIPLAFVLALVAVVMARRARRNLKWLQLGEGGTAIATLAVLVGALTLCLSLAAALSVGFYELFVVYQHSG*
C688J18823_103670182	3300001686	Soil	IMARRARDNLRWLQLREGGTGVATVAYILGAVTVCVAITAALSIGFYELVLAYQRSR*
JGI24747J21853_10412262	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	MARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR*
JGI24744J21845_100115841	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	AYAVPLAFLLGLVALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR*
JGI25383J37093_101584232	3300002560	Grasslands Soil	DTAYAIPLAFLLGLVALVMARRARHNLRWLRLQDGGTGLATVAVVIGTLALCLAVAAALSVGFYGLVVVYQHSR*
C688J35102_1194984412	3300002568	Soil	RRARDNLRWLQLREGGTGVATVAYILGAVTVCVAITAALSIGFYELVLAYQRSR*
C688J35102_1202750791	3300002568	Soil	LIMARRARENLRWFRLTEGGTGVASLAIIISAVTVCLAVTAALSIGFYELVLVYQRSR*
Ga0063454_1013291072	3300004081	Soil	ALIMARRARENLRWFRLTEGGTGVASLAIIISAVTVCLAVTAALSIGFYELVLVYQRSR*
Ga0062593_1001662413	3300004114	Soil	TLLEAGYAIPLAFVLGLVGLVMARRARDNVRWLRIRGGGTAVASTALVIGLIAVCLAVAAALSIGFYELVLLYERSR*
Ga0062593_1023843182	3300004114	Soil	LLDAGYAIPLAFVLGLVALIMARRARDNLRWFRLKEGGTAVASVAIVISAVTVCLALTAALSIGFYELVLVYQHSR*
Ga0062595_1011676121	3300004479	Soil	RRNLRWLRLREGRTGVATTAVAIATITLCVSVMAALSVGFYGLVVWYQHSR*
Ga0062595_1017894202	3300004479	Soil	DAGYAIPLSFLLGLVALIMAKRARDNLHWFHLREGGTGVATAAIIIAGVTVCLALTAALSIGFYELFLVYQHSR*
Ga0062591_1010388671	3300004643	Soil	LGLVAFVMARRAKENLRWLQLREGRTRVASTAVIVGALTVCLALTAALSVGFYELVLVYQHSR*
Ga0066673_102867191	3300005175	Soil	LLDAGYAIPLAFLLGLVALVMARRARENLRWLRVRDGGTGVASTAVIVAALAVCLALTAALSIGFYELVLVYQHSR*
Ga0066671_104293951	3300005184	Soil	AVVGLVMARRARANLRWLQVRAGGTGVASAAVIASTLALSLAVTGALSIGFYELVLVYQHSR*
Ga0066676_109727542	3300005186	Soil	LRWLRVREGGTAVAQAAVVVGTIAICLAVAAALSVGFYGLVVVYQHSR*
Ga0070673_1014941501	3300005364	Switchgrass Rhizosphere	LIMARRARNNLRWLRLREGGTGVASTAVILATVVLCLAVTAALSIGFYELVLVYQHSR*
Ga0070714_1022938362	3300005435	Agricultural Soil	YAVPLAFLLGLVALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR*
Ga0070707_1004939413	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LVALIMARRARDNLRWLRVKDGGTGVASTAVIVAALTVCVAVTAALSVGFYELVVAYQHSR*
Ga0070696_1007141901	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AIPLAFLLTLTGLLMARRARHNLRWLRVREGGTPVAQAAVVVGTIAICLAVAAALSVGFYGLVVVYQHSR*
Ga0066695_104253352	3300005553	Soil	AYAIPLAFLLAVWSVVMARRARHNLRWLRVREGGTAVAQTAVVVGTLGLLLAIVAALSVGFYGLVVVYQHSR*
Ga0066707_106409941	3300005556	Soil	LGLVAVVMARRARENLRWLRVQEGGTGVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR*
Ga0066651_100198025	3300006031	Soil	RWFRLKEGGTGVASLAIIIAAVTLCLAVTAALSVGFYELVLVYQHSR*
Ga0066652_1003618232	3300006046	Soil	AVIMARRARDNLRWLRLKEGGTAVAGLAIIIGAVTVCLALTAALSIGFYELVLAYQHSR*
Ga0070712_1005796632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VALIMARRARNNLHWFHLREGGTGVATLAIIVAGVTLCLALTAALSIGFYELFLVYQHSR
Ga0079222_104384752	3300006755	Agricultural Soil	LVALIMARRARDNLRWLRLREGGTGVASAAIILGAVTVCLALTAALSIGFYELVLAYQHSR*
Ga0075424_1022469861	3300006904	Populus Rhizosphere	RDNLRWLRLREGGTGVATTAVILAAIVICLALTAALSIGFYELVLVYQHSR*
Ga0099827_113840222	3300009090	Vadose Zone Soil	VPVAFLLGLVALIMARRARSNLRWIQLRDDGTGVASAAVVVAAVAVCLALAAALSVGFYGLVVLYQHSR*
Ga0105245_126806581	3300009098	Miscanthus Rhizosphere	AFFLGLVAFVMARRAKENLRWLQLREGRTRVASTAVIVGALTVCLALTAALSVGFYELVLVYQHSR*
Ga0075423_120341792	3300009162	Populus Rhizosphere	MARRARKNLRWLRLREGGTGVASAAVALSTLAVCVALTAALSVGFYELVLLYQHSR*
Ga0105088_10564172	3300009810	Groundwater Sand	MARRARQNLRWFRLQQGGTGVASAAAIIGLVGLCLALTAALSVGFYELVLLYQRSS*
Ga0126309_112770662	3300010039	Serpentine Soil	YAVPLAFLLGLTALLMAKRARDNLRWLRLREQGVAAARVGIILGLLAVCFALVAALSVGFYEGWLFYERHR*
Ga0126370_119490142	3300010358	Tropical Forest Soil	NLRWFRLREGGTGVASTAIVISTVTLCLAVTAALSIGFYELVLAYQHSR*
Ga0134128_126032951	3300010373	Terrestrial Soil	GLVAVVMARRARTNLRWLSLRGEGTGVASAALIVGMLALCLALTAALSIGFYELVLLYQRSR*
Ga0134127_121790361	3300010399	Terrestrial Soil	LGLVALVMARRARNNLRWLQLREGGNGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR*
Ga0151490_12482452	3300011107	Soil	VLGLVALVMARRARNNLRWLQLREGGNGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR*
Ga0137388_107040222	3300012189	Vadose Zone Soil	YAIPLAFLLGLVAFVMARRAKRNLQWLQLREGKTKVATVAVFVAAVTLFLALAAALSVGFYELVVAYQHSR*
Ga0137382_108441441	3300012200	Vadose Zone Soil	RNNLRWLQLREGATGVATVAALVAAVALCLALVAALSVGFYGLFVLYQHSR*
Ga0137365_108973462	3300012201	Vadose Zone Soil	GYAIPLAFLLGLLAFVMARRARENLRWLRVKGGGTGVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR*
Ga0137399_100300271	3300012203	Vadose Zone Soil	RNLQWLQLREGRTGIASVAVFVGALALCLSLAAALSVGFYGLFVAYQHSR*
Ga0137374_110957851	3300012204	Vadose Zone Soil	AAYAIPLAFLLGLSALVMAKRARENLRWLRLREGRSAVASTAVIVGALTVCLAVTAALSVGFYELVLVYQHSR*
Ga0137377_105049121	3300012211	Vadose Zone Soil	FLFGVVALVMARRARENLRWLRVREGGTGVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR*
Ga0137377_114260211	3300012211	Vadose Zone Soil	RARRNLKWLQLREGGRSIATVAVVVGAVAFCLAVAAALSVGFYGLVVVYQHSR*
Ga0137367_105577441	3300012353	Vadose Zone Soil	LLDAAYGIPVAFLLGLLALVMARRARENLRWLQLREQGTAVASTAVILAALTLCLAVTAALSIGFYELVLVYQHSR*
Ga0137366_111003262	3300012354	Vadose Zone Soil	ALIMARRARSNLRWIQLRDDGTGIASAAVVVAAVAVCLALAAALSVGFYGLVVLYQHSR*
Ga0137369_103253082	3300012355	Vadose Zone Soil	AYVIPLGFLLGLVAVVMARRARDNLRWLRLREAGTGVASAAVIVGTLAVCLAVTAALSVGFYELVLLYQRSR*
Ga0137368_104181981	3300012358	Vadose Zone Soil	RARENLRWLRLREEGTRVASTAVIVGALAVCLAVTAALSIGFYELVLVYQHSR*
Ga0150984_1125899022	3300012469	Avena Fatua Rhizosphere	RDNLQWFRLSEGGTGVASVAIIVAAVTVCLALTAALSIGFYELFLVYQHSR*
Ga0150984_1213092251	3300012469	Avena Fatua Rhizosphere	IMAQRARENLRWFRLTEGGTGVASLAIIISAVTVCLAVTAALSIGFYELVLVYQRSR*
Ga0164299_112679091	3300012958	Soil	FLLGLVGLVMAKRARDNLRWLRLREGGTAAARIGIILGLLAVCLAVTAALSVGFYEAWLVYERHR*
Ga0157371_105170282	3300013102	Corn Rhizosphere	GAFVLGLVALIMARRARDNLRWFRLKEGGTAVASVAIVISAVTVCLALTAALSIGFYELVLVYQHSR*
Ga0157374_127920342	3300013296	Miscanthus Rhizosphere	LAFLLGLVALIMARRARNNLRWLRLREGGTRVASTAVILATVVLCLAVTAALSIGFYELVLVYQHSR*
Ga0137418_110301561	3300015241	Vadose Zone Soil	IPLAFVLGLIALVMARRAKRNLQWLQLREGGTGIATVAVVVGALAFCLAVAAALSVGFYGLVVVYQHSR*
Ga0184610_10620023	3300017997	Groundwater Sediment	ARRARNNLRWLQLRENGTGVAGVAVLLAAVALCLAIVAALSVGFYGLVVLYQHSR
Ga0184605_102890691	3300018027	Groundwater Sediment	AIPLAFLFGLVSLVMARRAKRNLEWLQLREGGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0184621_100614263	3300018054	Groundwater Sediment	GLIGVVMARRARENLRWLRLREGGTAVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR
Ga0184619_100980173	3300018061	Groundwater Sediment	MARRARENLRWLRLREGGTAVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR
Ga0066667_100511181	3300018433	Grasslands Soil	RHNLRWLRVQEGGTGVARTAVVVATLGLCLAVAAALSVGFYGLVVVYQHSR
Ga0066662_111758502	3300018468	Grasslands Soil	GLLDAGWAIPLAFLLAVVGLVMARRARANLRWLQVRAGGTGVASAAVIASTLALSLAVTGALSIGFYELVLVYQHSR
Ga0066662_114179532	3300018468	Grasslands Soil	GYAIPLAFVLGLVALVMARRARDNLRWLRVRDGGTGVASIAVIGAALAVCLALTAALSIGFYELVLVYQHSR
Ga0193731_11305122	3300020001	Soil	VALIMARRARRNLRWLQLREGGTSVASAAVLVAALTVCLALAAALSVAFYGLVVLYQHSR
Ga0210378_103717171	3300021073	Groundwater Sediment	SVVMARRARHNLRWLRLRQGETGVAKAAVAIGAFALCLSLAAALSVGFYGLVVVYQHSR
Ga0222621_10106851	3300021510	Groundwater Sediment	VMARRARNNLRWLQLREGGTGVATVAVLVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0179591_11339503	3300024347	Vadose Zone Soil	MARRAKRNLEWLQLRGEGTGIATVAVVIGAITVCLAVAAALAVGFYGLVVVYQHSR
Ga0207692_102293621	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0207647_101059101	3300025904	Corn Rhizosphere	RARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0207645_110312152	3300025907	Miscanthus Rhizosphere	FLGLVAFVMARRAKENLRWLQLREGRTRVASTAVIVGALTVCLALTAALSVGFYELVLVYQHSR
Ga0207654_103450711	3300025911	Corn Rhizosphere	LAFLLGLVALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0207693_102264393	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AYAVPLAFLLGLVGLVMAKRARDNLRWLRLREGGTAAARIGIILGLLAVCLAVTAALSVGFYEAWLVYERHR
Ga0207693_114337472	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RRARNNLHWFHLREGGTGVATLAIIVAGVTLCLALTAALSIGFYELFLVYQHSR
Ga0207660_101793371	3300025917	Corn Rhizosphere	NLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0207649_108083631	3300025920	Corn Rhizosphere	ALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0207664_117026351	3300025929	Agricultural Soil	YAVPLAFLLGLVALVMARRARNNLRWLQLREGGTGVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0209234_12153471	3300026295	Grasslands Soil	MARRAKRNLQWLQLREGRTGIASVAVFVGALALCLSLAAALSVGFYGLFVAYQHSR
Ga0209690_10249171	3300026524	Soil	LLGLLAFVMARRAKRNLQWLQLREGRTGIASVAVFVGALALCLSLAAALSVGFYGLFVAYQHSR
Ga0209846_10325272	3300027277	Groundwater Sand	RSRENLRWLSLREGGTGVASAALIVGMVALCLALTAALSVGFYELVLLYQRSR
Ga0209382_100609616	3300027909	Populus Rhizosphere	PLAFILGLMGLVMARRARDNVRWLRIRGGGTGVATTAVVIGLIAVCLAVTAALSIGFYELVLLYEQSR
Ga0307276_100337113	3300028705	Soil	LAFLLGLVSLVMARRAKRNLEWLQLREGGNGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0307303_100258083	3300028713	Soil	LDTAYAVPLAFLLGVVALVMARRARNNLRWLELREGGTSVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0307309_100012774	3300028714	Soil	LLLGSASLLTMPVALVMARRARNNLRWLQLREGGTGVATVAVLVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0307313_102390451	3300028715	Soil	SLVMARRAKRNLEWLQLREGGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0307298_100217673	3300028717	Soil	LLEAGYGIPLAFLLGLIAVVMARRARENLRWLRLREGGTAVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR
Ga0307307_102315911	3300028718	Soil	LVSLVMARRAKRNLEWLQLREGGTGIATVAVVVGAVAFCVAVAAALSVGFYGLVVVYQHS
Ga0307301_100072191	3300028719	Soil	RARENLRWLRLREGGTAVASTAVIIGALAVCLALTAALSIGFYELVLVYQHSR
Ga0307280_100405273	3300028768	Soil	GLISLVMARRAKRNLEWLQLRESGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0307306_102001731	3300028782	Soil	GIPLAFLLGLIAVVMARRARENLRWLRLREGGTAVASTAVIVGALAVCLALTAALSIGFYELVLVYQHSR
Ga0307282_101534111	3300028784	Soil	AGYAAIPIAFVLGLVALVMARRARRNLKWLQVREGGTSIATVAVVVGAVAFCLAVAAALSVGFYGLVVVYQHSR
Ga0307299_101453262	3300028793	Soil	ARRAKRNLEWLQLREGGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0307284_100307831	3300028799	Soil	AFLLGLLSVVMARRARHNLRWLRLQEGKTGVAKAAVAVGALALSLSLAAALSVGFYGLVVVYQQSR
Ga0307284_103602241	3300028799	Soil	ARENLRWLGLREGRTGLASTAVIVAALALCLALTAALSVGFYELVLVYQHSR
Ga0307296_108160141	3300028819	Soil	IPLAFLLGLVSVVMARRARHNLRWLRLRQGETGVAKAAVAIGALALCLSLAAALSVGFYGLVVVYQHSR
Ga0307310_100082241	3300028824	Soil	GVVALVMARRARNNLRWLELREGGTSVATVAVVVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0307312_100663903	3300028828	Soil	AIPLAFLLGLVSVVMARRARENLRWLRLREGGTSVASTAVIVGLVTVSLALTAALSIGFYELILVYQHHR
Ga0307278_102202641	3300028878	Soil	FLLGLLSVVMARRARHNLRWLRLRQGETGVAKAAVAIGAFALCLSLAAALSVGFYGLVVVYQHSR
Ga0307300_100090291	3300028880	Soil	FVLGLVALVMARRARNNLRWLQLREGGTGVATVAVLVAAVALCLALVAALSVGFYGLVVLYQHSR
Ga0307277_101155003	3300028881	Soil	GLVSLVMARRAKRNLEWLQLREGGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0307277_101684192	3300028881	Soil	RRARENLRWLRLREGGTSVASTAVIVGLVTVSLALTAALSIGFYELILVYQHHR
Ga0307304_102487992	3300028885	Soil	SLVMARRAKRNLEWLQLRESGMGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR
Ga0268241_100555611	3300030511	Soil	LIMARRARENLRWLQLREGGTGVATTAIIVSGVTVCLALAAGLSIAFYELLLVYQHSR
Ga0318534_104501122	3300031544	Soil	AIPIAFLLGFVALIMARRARGNLRWLSVRDTGTRVASTAVVIAGITLCLAVTAALSIGFYELVLIYQHSR
Ga0307471_1029789422	3300032180	Hardwood Forest Soil	RNLEWVQLREGGTGIATVAVVVGALAFCVAVAAALSVGFYGLVVVYQHSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099649

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences