Metagenome / Metatranscriptome Family F080490

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080490
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	57 residues
Representative Sequence	PDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Number of Associated Samples	21
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.43 %
% of genes near scaffold ends (potentially truncated)	41.74 %
% of genes from short scaffolds (< 2000 bps)	81.74 %
Associated GOLD sequencing projects	13
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (95.652 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (87.826 % of family members)
Environment Ontology (ENVO)	Unclassified (87.826 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (87.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 26.83% Coil/Unstructured: 73.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13442	Cytochrome_CBB3	0.88
PF00686	CBM_20	0.88
PF00125	Histone	0.88
PF00098	zf-CCHC	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
All Organisms	root	All Organisms	4.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
cellular organisms	root	All Organisms → cellular organisms	4.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.87 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.87 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.87 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.65 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.87 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006165\|Ga0075443_10333728	Not Available	561	Open in IMG/M
3300007516\|Ga0105050_10524757	Not Available	697	Open in IMG/M
3300007516\|Ga0105050_10828949	Not Available	526	Open in IMG/M
3300007519\|Ga0105055_10015607	Not Available	8914	Open in IMG/M
3300007519\|Ga0105055_10038999	Not Available	5178	Open in IMG/M
3300007519\|Ga0105055_10081817	Not Available	3399	Open in IMG/M
3300007519\|Ga0105055_10098330	All Organisms → cellular organisms → Eukaryota	3053	Open in IMG/M
3300007519\|Ga0105055_10326359	Not Available	1398	Open in IMG/M
3300007519\|Ga0105055_10345165	Not Available	1342	Open in IMG/M
3300007519\|Ga0105055_10415485	Not Available	1170	Open in IMG/M
3300007519\|Ga0105055_10641819	Not Available	842	Open in IMG/M
3300007519\|Ga0105055_10791724	Not Available	719	Open in IMG/M
3300007519\|Ga0105055_10848996	Not Available	683	Open in IMG/M
3300007519\|Ga0105055_10964485	Not Available	622	Open in IMG/M
3300007519\|Ga0105055_10984896	Not Available	612	Open in IMG/M
3300007519\|Ga0105055_11076484	Not Available	574	Open in IMG/M
3300007519\|Ga0105055_11079975	Not Available	573	Open in IMG/M
3300007519\|Ga0105055_11135063	Not Available	553	Open in IMG/M
3300007520\|Ga0105054_10029905	Not Available	5996	Open in IMG/M
3300007520\|Ga0105054_10110408	Not Available	2802	Open in IMG/M
3300007520\|Ga0105054_10149967	Not Available	2321	Open in IMG/M
3300007520\|Ga0105054_10217782	Not Available	1820	Open in IMG/M
3300007520\|Ga0105054_10288135	Not Available	1496	Open in IMG/M
3300007520\|Ga0105054_10510202	Not Available	972	Open in IMG/M
3300007520\|Ga0105054_10618768	Not Available	837	Open in IMG/M
3300007520\|Ga0105054_10675514	Not Available	782	Open in IMG/M
3300007520\|Ga0105054_10929158	Not Available	614	Open in IMG/M
3300007522\|Ga0105053_10219234	Not Available	1813	Open in IMG/M
3300007522\|Ga0105053_10532068	Not Available	945	Open in IMG/M
3300007522\|Ga0105053_10645365	Not Available	814	Open in IMG/M
3300007522\|Ga0105053_10662231	Not Available	798	Open in IMG/M
3300007522\|Ga0105053_10720248	Not Available	748	Open in IMG/M
3300007522\|Ga0105053_10794849	Not Available	694	Open in IMG/M
3300007522\|Ga0105053_10966446	Not Available	600	Open in IMG/M
3300007522\|Ga0105053_10996210	Not Available	587	Open in IMG/M
3300007522\|Ga0105053_11060194	Not Available	561	Open in IMG/M
3300007523\|Ga0105052_10113503	Not Available	1858	Open in IMG/M
3300007523\|Ga0105052_10171839	Not Available	1469	Open in IMG/M
3300007523\|Ga0105052_10615848	Not Available	694	Open in IMG/M
3300007523\|Ga0105052_10824693	Not Available	583	Open in IMG/M
3300007523\|Ga0105052_10926210	Not Available	544	Open in IMG/M
3300007523\|Ga0105052_10936300	Not Available	540	Open in IMG/M
3300007523\|Ga0105052_10948567	Not Available	536	Open in IMG/M
3300007722\|Ga0105051_10040496	Not Available	3793	Open in IMG/M
3300007722\|Ga0105051_10244403	Not Available	1364	Open in IMG/M
3300007722\|Ga0105051_10244403	Not Available	1364	Open in IMG/M
3300007722\|Ga0105051_10287950	Not Available	1241	Open in IMG/M
3300007722\|Ga0105051_10440938	Not Available	969	Open in IMG/M
3300007722\|Ga0105051_10519451	Not Available	881	Open in IMG/M
3300007722\|Ga0105051_10597365	Not Available	811	Open in IMG/M
3300007722\|Ga0105051_11251744	Not Available	525	Open in IMG/M
3300011188\|Ga0136587_1036899	Not Available	1187	Open in IMG/M
3300011188\|Ga0136587_1044309	Not Available	1085	Open in IMG/M
3300011188\|Ga0136587_1160330	Not Available	581	Open in IMG/M
3300012031\|Ga0136561_1066524	Not Available	518	Open in IMG/M
3300012037\|Ga0136559_1057217	Not Available	1013	Open in IMG/M
3300012037\|Ga0136559_1140390	Not Available	660	Open in IMG/M
3300012037\|Ga0136559_1174412	Not Available	595	Open in IMG/M
3300012272\|Ga0136586_1117014	Not Available	641	Open in IMG/M
3300017284\|Ga0186171_1019579	Not Available	964	Open in IMG/M
3300022827\|Ga0222647_1027139	Not Available	852	Open in IMG/M
3300027832\|Ga0209491_10069771	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3439	Open in IMG/M
3300027832\|Ga0209491_10145330	Not Available	2150	Open in IMG/M
3300027832\|Ga0209491_10161896	Not Available	1995	Open in IMG/M
3300027832\|Ga0209491_10174083	Not Available	1895	Open in IMG/M
3300027832\|Ga0209491_10211243	Not Available	1645	Open in IMG/M
3300027832\|Ga0209491_10451578	Not Available	876	Open in IMG/M
3300027832\|Ga0209491_10521653	Not Available	765	Open in IMG/M
3300027832\|Ga0209491_10788437	Not Available	514	Open in IMG/M
3300027848\|Ga0209390_10023684	Not Available	6392	Open in IMG/M
3300027848\|Ga0209390_10053865	Not Available	3980	Open in IMG/M
3300027848\|Ga0209390_10070903	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3391	Open in IMG/M
3300027848\|Ga0209390_10198955	Not Available	1730	Open in IMG/M
3300027848\|Ga0209390_10241783	Not Available	1496	Open in IMG/M
3300027848\|Ga0209390_10273889	Not Available	1357	Open in IMG/M
3300027848\|Ga0209390_10357036	Not Available	1091	Open in IMG/M
3300027848\|Ga0209390_10430133	Not Available	929	Open in IMG/M
3300027848\|Ga0209390_10460040	Not Available	876	Open in IMG/M
3300027848\|Ga0209390_10513552	Not Available	790	Open in IMG/M
3300027848\|Ga0209390_10571196	Not Available	715	Open in IMG/M
3300027976\|Ga0209702_10323412	Not Available	623	Open in IMG/M
3300027976\|Ga0209702_10397606	Not Available	544	Open in IMG/M
3300027983\|Ga0209284_10017399	All Organisms → cellular organisms → Eukaryota	4750	Open in IMG/M
3300027983\|Ga0209284_10029238	Not Available	3237	Open in IMG/M
3300027983\|Ga0209284_10079223	Not Available	1764	Open in IMG/M
3300027983\|Ga0209284_10079223	Not Available	1764	Open in IMG/M
3300027983\|Ga0209284_10150024	Not Available	1223	Open in IMG/M
3300027983\|Ga0209284_10213307	Not Available	998	Open in IMG/M
3300027983\|Ga0209284_10310856	Not Available	795	Open in IMG/M
3300027983\|Ga0209284_10364982	Not Available	718	Open in IMG/M
3300027983\|Ga0209284_10523921	Not Available	565	Open in IMG/M
3300027983\|Ga0209284_10527758	Not Available	563	Open in IMG/M
3300028369\|Ga0306896_1005705	Not Available	1876	Open in IMG/M
3300028369\|Ga0306896_1047731	Not Available	660	Open in IMG/M
3300028413\|Ga0306870_1027816	Not Available	1015	Open in IMG/M
3300032435\|Ga0335398_10031544	Not Available	5508	Open in IMG/M
3300032435\|Ga0335398_10090249	Not Available	3038	Open in IMG/M
3300032435\|Ga0335398_10162492	Not Available	2104	Open in IMG/M
3300032435\|Ga0335398_10247072	Not Available	1571	Open in IMG/M
3300032435\|Ga0335398_10332367	Not Available	1252	Open in IMG/M
3300032435\|Ga0335398_10355661	Not Available	1187	Open in IMG/M
3300032435\|Ga0335398_10442997	Not Available	990	Open in IMG/M
3300032435\|Ga0335398_10530291	Not Available	844	Open in IMG/M
3300032435\|Ga0335398_10607442	Not Available	744	Open in IMG/M
3300032435\|Ga0335398_10726214	Not Available	631	Open in IMG/M
3300032462\|Ga0335396_10035039	All Organisms → cellular organisms → Eukaryota	3478	Open in IMG/M
3300032462\|Ga0335396_10045816	Not Available	2963	Open in IMG/M
3300032462\|Ga0335396_10054240	Not Available	2682	Open in IMG/M
3300032462\|Ga0335396_10155737	Not Available	1506	Open in IMG/M
3300032462\|Ga0335396_10220232	Not Available	1246	Open in IMG/M
3300032462\|Ga0335396_10267041	Not Available	1118	Open in IMG/M
3300032462\|Ga0335396_10412570	Not Available	869	Open in IMG/M
3300032462\|Ga0335396_10576166	Not Available	704	Open in IMG/M
3300032462\|Ga0335396_10642883	Not Available	656	Open in IMG/M
3300032462\|Ga0335396_10939832	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.13%
Host-Associated	Host-Associated	0.87%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.13%
Human	Host-Associated → Human	0.87%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.83%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	10.43%
Marine	Environmental → Aquatic → Marine	0.87%
Digestive System	Host-Associated → Human → Digestive System	0.87%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	87.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	10.43%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.87%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.87%

Habitat	Taxonomy	Distribution
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	87.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	10.43%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.87%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.87%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	87.83%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	9.57%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.87%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.87%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental	Open in IMG/M
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental	Open in IMG/M
3300007520	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)	Environmental	Open in IMG/M
3300007522	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01	Environmental	Open in IMG/M
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental	Open in IMG/M
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental	Open in IMG/M
3300011188	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563	Environmental	Open in IMG/M
3300012031	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498	Environmental	Open in IMG/M
3300012037	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496	Environmental	Open in IMG/M
3300012272	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562	Environmental	Open in IMG/M
3300017284	Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 4 C, 31 psu salinity and 530 ?mol photons light - Geminigera cryophila CCMP 2564 (MMETSP0799)	Host-Associated	Open in IMG/M
3300022827	Saline water microbial communities from Ace Lake, Antarctica - #333	Environmental	Open in IMG/M
3300027832	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)	Environmental	Open in IMG/M
3300027848	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)	Environmental	Open in IMG/M
3300027976	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)	Environmental	Open in IMG/M
3300027983	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)	Environmental	Open in IMG/M
3300028369	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562 (v2)	Environmental	Open in IMG/M
3300028413	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496 (v2)	Environmental	Open in IMG/M
3300032435	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075443_103337281	3300006165	Marine	MPMVRGGPRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGLLLVDLLDAHVQGGTKMEPCH*
Ga0105050_105247572	3300007516	Freshwater	VKMAGNFNKVRQGAEPCKMSMVRGGPRWSPDIIGCWSTYYKDAYGHGESKMEVYHCHGGGRLLVDLLDAHVQGGTRMEP*
Ga0105050_108289491	3300007516	Freshwater	MEEIGCWSTYYKDAYGHGESKMEFYHCHGGGQLLVDLLDAHVQGGTKMEL*
Ga0105055_1001560711	3300007519	Freshwater	MEEVGCWSTYHIDAYSHGESKMEFYHCHGGGRLLVHLLDAHVQGGTQMEP*
Ga0105055_100389994	3300007519	Freshwater	MAVFDKTEQLVMSPDVIMEEASCWSTYYENAYGHGESKMDFYHCHGEGWLLVDLLDVHVQGGTKIEP*
Ga0105055_100818172	3300007519	Freshwater	MVRGGPRWSPDIIMEQVGSWSTYYKDAYGHGESKMEFYHCHGGGWLVVDLLDAHAQGGTKMEP*
Ga0105055_100983301	3300007519	Freshwater	MSMVRGGSRWRPDIIMEEVGSWSTYYKDVHANGESKMEFYHCHGGGWLMVDLLDVHVQGGTKMEP*
Ga0105055_103263591	3300007519	Freshwater	MPMVRGAPRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYDCHGGGRLLVDILDAHVQGGTKMEPCP*
Ga0105055_103451652	3300007519	Freshwater	MPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFHHCHGGGRLLVDLLDAHVQGGTKMEL*
Ga0105055_104154851	3300007519	Freshwater	MEKVGCWSNYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTNMEP*
Ga0105055_106418191	3300007519	Freshwater	PRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLMVDLLDAHVQGGTKMEP*
Ga0105055_107917241	3300007519	Freshwater	KVRQGAQPCKMPMVRGGPRWSPDIIMEEVGSWSTYYKDAYVHGESKMEFYHCHGGGRLLVDLLDAHFQGGTKMEP*
Ga0105055_108489961	3300007519	Freshwater	MEEVGSSSTYYKDAYGHGESKMEFCHRHGGGRLLVDLLDAHVQGG
Ga0105055_109644851	3300007519	Freshwater	GCWSTYYIDAYGNGESKMEFCRCHGGSRLMVDLLDAHVQGGAKMEP*
Ga0105055_109848961	3300007519	Freshwater	MEEVGCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQ
Ga0105055_110764841	3300007519	Freshwater	MPMVRGGPRCSTDIIMEEVSCWSTYYKDAYGHGESKMEFYHCHGGGRLQVDLLDAHDQGGTKMEP*
Ga0105055_110799751	3300007519	Freshwater	QGAQPCKMPMVREGARWSPDIIMQKVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQAGTNMEP*
Ga0105055_111350631	3300007519	Freshwater	MEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0105054_100299052	3300007520	Freshwater	MVRGGPRWSPDIIMEQVGSWSTYYKDAYGHGESKMEFYHCHGGGWLVVDLLDAHVQGGTKMEP*
Ga0105054_101104082	3300007520	Freshwater	MAVFDKTEQLVMSPDVIMEEASCWSTYYENAYGHGESKMDFYHCHGGGWLLVDLLDVHVQGGTKIEP*
Ga0105054_101499673	3300007520	Freshwater	MAVFDKTEPLVMSPDIITEEVGSWSTYYKDAYGHGESKMEFYCCHGGRRLLVDLLDAHVQGGTKMEP*
Ga0105054_102177821	3300007520	Freshwater	MEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQAGTNMEP*
Ga0105054_102881352	3300007520	Freshwater	MEEVGCWSNYYKDAYGHGESKIEFYHCHEGGRLLVDLLDAHVQGGTKMEP*
Ga0105054_105102021	3300007520	Freshwater	MPMVGGGPRWTPDVIMEEVGCWSTYYKDAYGHGESKMEFYHCNGGGRLLVDLLDAHVQGGTKMEP*
Ga0105054_106187681	3300007520	Freshwater	QGAQPCKMPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHEGGQLLVDLLDAHVQGGTKLEP*
Ga0105054_106755141	3300007520	Freshwater	MEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHFQGGTKMEP*
Ga0105054_109291581	3300007520	Freshwater	MSPDITMEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAH
Ga0105053_102192344	3300007522	Freshwater	MPMVRGGPRWSPDIIMQEVGSWSAYYKDAYGHGESKMEFYHCDGGGRLLVDLLDAHAQGGTKMEP*
Ga0105053_105320681	3300007522	Freshwater	KVRQGAQPCKMPMVRGGPRWIPVIIMEEVGSWSTYYKDAYGHGEFKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0105053_106453652	3300007522	Freshwater	GPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHEGGRLLVDLLDVHVQGGTKLEP*
Ga0105053_106622313	3300007522	Freshwater	VRGGPRWSPDIIMEEVGCWSTYYKDAYDHGESKMEFYHCHGGGRLVVDLLDTHVQGGTTMEP*
Ga0105053_107202481	3300007522	Freshwater	MPMVRGGPRWSPDIIMEEVGSSSTYYKDAYGHGESKMEFCHRHGGGRLLVDLLDAHVQGGTKMEP*
Ga0105053_107948491	3300007522	Freshwater	MEEVSCWSTYYKDAYGHGEPKMEFYHCHGGGRLLVDLLDAHVHGGTKMEP*
Ga0105053_109664461	3300007522	Freshwater	QSCKMPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHGGDQLLVDLLDAHVQGGTTMEP*
Ga0105053_109962101	3300007522	Freshwater	MEKVGCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHV
Ga0105053_110601941	3300007522	Freshwater	MGEVGSWSTYYKDAYGHGESKMEFYHCQGGGRLLVDLLDAHVQGGTKMEP*
Ga0105052_101135031	3300007523	Freshwater	MEWVGSWSTYYKDACGHGESKMEFYRCHGGGRLLVDLLDAHV
Ga0105052_101718391	3300007523	Freshwater	MVKGGLRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYRCHGGGWLLVASLDAHVQGGTKMEP*
Ga0105052_106158481	3300007523	Freshwater	MEEVGCWSTYYIDAYGNGESKMEFYHCHGRGWLLVDRLDAHVQGGTKMEP*
Ga0105052_108246931	3300007523	Freshwater	MEEVGCWSTYYIDAYGNGESKMEFCRCHGGSRLMVNLLDAH
Ga0105052_109262102	3300007523	Freshwater	MAGNFNKVRKGAQPCKMPMVRGGPRWSPYIIMEEVGCWSTCYKDAYGHGESKMEFYHCHRGGRLLVDLLDAHVQGGTKME
Ga0105052_109363001	3300007523	Freshwater	MEEVCCWPTCYKDAYGHGKSKMKFWHCHGEGQLLVNLLHANGTHGKM
Ga0105052_109485671	3300007523	Freshwater	DIIMEEVGSWSTYYKDAYGHGESKVFYHCHGGGRLLVDLLDAHDQGGTKMEP*
Ga0105051_100404961	3300007722	Freshwater	RWSPDIIMEQVGCWSTYYKDAYGHGESKMEFYRCHGGGWLLVDLLDARIQGGTKMEP*
Ga0105051_102444032	3300007722	Freshwater	MFRGGPRWSPYIIMEEVGCWSTYYKDAYGHGESKMGFYHCHEGGRLLVDLLDAHVQGGTKMEP*
Ga0105051_102444034	3300007722	Freshwater	MVRGGPRWSPVIIMEQVGCWLTYYKDAHGHGESKKGFCHCHGGGWLLVDLLDAHVQGGTKMES*
Ga0105051_102879501	3300007722	Freshwater	VRGGPRWSPDIIMEEVGCWSTYYEDAYGHGESKMGFYHCHGGGWLLVDLLDAHVQGGTKTEP*
Ga0105051_104409382	3300007722	Freshwater	MEEVGSWSTYFKDAYGHGESKMEFYHCHGGGRLLSNLLDAHVQGGTKMEP*
Ga0105051_105194511	3300007722	Freshwater	MEEVSCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0105051_105973652	3300007722	Freshwater	MSMVRGGPRWNPDIIMEKVGFWSTCYKDAYDHGESKMEFYHCHGGGRLLVDLLDAHVQGGTTMEP*
Ga0105051_112517441	3300007722	Freshwater	WSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTTMEP*
Ga0136587_10368991	3300011188	Saline Lake	RWSPDIIMEEVGCWSTCYIDAYNHHPGQSKMEFHHCHGGGRLLVDLLDAHVQGGTKMEL*
Ga0136587_10443093	3300011188	Saline Lake	MEKVGCWSNYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGT
Ga0136587_11603301	3300011188	Saline Lake	MPMVRGGPRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0136561_10665242	3300012031	Saline Lake	RGGPRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0136559_10572172	3300012037	Saline Lake	MVRGGSRWRPDIIMEEVGSWSTYYKDVQANGESKMEFYHCHGGGWLMVDLLDVHVQGGTKMEP*
Ga0136559_11403902	3300012037	Saline Lake	WSTYYKDAYGHGESKMEFHHCHGGGRLLVDLLDAHVQGGTKMEL*
Ga0136559_11744123	3300012037	Saline Lake	MEKVGCWSNYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQ
Ga0136586_11170141	3300012272	Saline Lake	PDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP*
Ga0186171_10195791	3300017284	Host-Associated	MEQVGCWSTYYKDAYGHGESKMEFYRCHGGRRLLVDLLDAHVQGGTKMEP
Ga0222647_10271392	3300022827	Saline Water	MVRGGPRWSPDIIMEQVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0209491_100697711	3300027832	Freshwater	MSMVRGGSRWRPDIIMEEVGSWSTYYKDVHANGESKMEFYHCHGGGWLMVDLLDVHVQGGTKMEP
Ga0209491_101453301	3300027832	Freshwater	MEEVARWSTYHIDAYGHGESKMEFYRCHGGSRLMVDLLHAHVQEGTKMEP
Ga0209491_101618962	3300027832	Freshwater	MVRGGPRWSPDIIMEQVGSWSTYYKDAYGHGESKMEFYHCHGGGWLVVDLLDAHAQGGTKMEP
Ga0209491_101740831	3300027832	Freshwater	MEEIGCWSTYYKDAYGHGESKMEFYHCHGGGQLLVDLLDAHVQGGTKMEL
Ga0209491_102112431	3300027832	Freshwater	MPMVRGGPRWSPDIIMQEVGSWSAYYKDAYGHGESKMEFYHCDGGGRLLVDLLDAHAQGGTKMEP
Ga0209491_104515782	3300027832	Freshwater	MSPDITMEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHFQGGTKMEP
Ga0209491_105216531	3300027832	Freshwater	MVRGGPRWSPDIIMAEVGSWSTYPKMELCHRHGGGRLLVDLLDAHDHGEPKIELCHLHGG
Ga0209491_107884371	3300027832	Freshwater	MVRGGPRWSPDIIMKEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0209390_1002368410	3300027848	Freshwater	MEEVGCWSTYHIDAYSHGESKMEFYHCHGGGRLLVHLLDAHVQGGTQMEP
Ga0209390_100538651	3300027848	Freshwater	MAVFDKTEQLVMSPDVIMEEASCWSTYYENAYGHGESKMDFYHCHGGGWLLVDLLDVHVQGGTKIEP
Ga0209390_100709036	3300027848	Freshwater	MMPMVRVGPRWIPYIIMEHVGSWLTYYKDAYGHGESKMEFYHRHGGGWLLVDLLDAHVQGGTRCSCSGLLESTLY
Ga0209390_101989553	3300027848	Freshwater	MEEVGCWSNYYKDAYGHGESKIEFYHCHEGGRLLVDLLDAHVQGGTKMEP
Ga0209390_102417834	3300027848	Freshwater	MPMVMGGARWSPNIIMEKVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQAGTNMEP
Ga0209390_102738891	3300027848	Freshwater	MEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0209390_103570361	3300027848	Freshwater	MSPDITMEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLVD
Ga0209390_104301332	3300027848	Freshwater	MEEVGCWSTYYIDAYGNEESKMEFCRCHGGSRLMV
Ga0209390_104600402	3300027848	Freshwater	MPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHGGDQLLVDLLDAHVQGGTTMEP
Ga0209390_105135523	3300027848	Freshwater	GPRWSPDIIMEEVGCWSTYYKDAYDHGESKMEFYHCHGGGRLVVDLLDTHVQGGTTMEP
Ga0209390_105711961	3300027848	Freshwater	MEEVGCWSTYYKDAYGHGESKMEFHHCHGGGRLLVDLLDAHVQGGTKMEL
Ga0209702_103234121	3300027976	Freshwater	MVKGGLRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHGGGWLLVASLDAHVQGGTKMEP
Ga0209702_103976062	3300027976	Freshwater	KMPMVRGGPRCSTDIIMEEVSCWSTYYKDAYGHGESKMEFYHCHGGGRLQVDLLDAHDQGGTKMEP
Ga0209284_100173991	3300027983	Freshwater	MEEVGCWSTYYIDAYGNGESKMEFYHCHGRGWLLVDRLDAHVQGGTKMEP
Ga0209284_100292384	3300027983	Freshwater	MVKGGLRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYRCHGGGWLLVASLDAHVQ
Ga0209284_100792231	3300027983	Freshwater	MVKRGPRWSPDIIMQKVGSWSTCYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQG
Ga0209284_100792234	3300027983	Freshwater	MPMVKRGPRWSPDIIMQEDGSWSTCYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEPWH
Ga0209284_101500241	3300027983	Freshwater	YYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHDKGGTRMEP
Ga0209284_102133072	3300027983	Freshwater	MVRGRPRWNPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0209284_103108561	3300027983	Freshwater	MPMVRGGPRWSPDIIMQEVGCWSTYTYKDAYGHGESKMEFYHCNGGGWLLVDLLDVHVHGGTKMEP
Ga0209284_103649821	3300027983	Freshwater	RGGPRWSPEIIMEEVGFWSTYYKDAYGHGESKMEFCHCHGGGGLVDLLDAHVQGGTKIEP
Ga0209284_105239212	3300027983	Freshwater	MEEVSCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0209284_105277581	3300027983	Freshwater	MEEVGCWSTYYIDAYGNEESKMEFCRCHGGSRLMVDLLDAH
Ga0306896_10057054	3300028369	Saline Lake	MPMVRGGPRWSPDIIMEEIGCWSTYYKDAYGHGESKMEFYHCHGGGQLLVDLLDAHVQGGTKMEL
Ga0306896_10477311	3300028369	Saline Lake	MEEVGCWSTYYKDAYGHGESKMEFYHCNGGGRLLVDLLDAHVQGGTKMEP
Ga0306870_10278162	3300028413	Saline Lake	MPMVRGGPRWSPDIIMEEVGSWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0335398_100315441	3300032435	Freshwater	MEQVGCWSTYYKDAYGHGKSKMEFYHCHGEGRLLVDLLDAHVQGGTKMEP
Ga0335398_100902495	3300032435	Freshwater	MPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMELHHCHGGGQLLVDLLDAHVQGGTKMEL
Ga0335398_101624921	3300032435	Freshwater	MPMVRGAPRWSPDIIMEEVGSWSTFYKDAYGHGESKMEFYDCHGGGRLLVDILDAHVQGGTKMEPCP
Ga0335398_102470721	3300032435	Freshwater	MSPEITMEEVGCWSNYYIDAYGNGESKMEFCRCHGGSRLMVDLLDAHVQGGTKMEP
Ga0335398_103323671	3300032435	Freshwater	MEQVGSWSTYYKDAYGHGESKMEFYHCHGEGRLLVDLLDAHVQGGTKMEP
Ga0335398_103556611	3300032435	Freshwater	MEEVSCWSTYYKDAYGHGEPKMEFYHCHGGGRLLVDLLDAHVHGGTKMEP
Ga0335398_104429972	3300032435	Freshwater	MVRGRPRWSPDIIMEQVGSWSTYYKDAYGHGESKMEPKFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0335398_105302912	3300032435	Freshwater	MEEVGCWSTYYKDAYGHGESKMEFYHCHGGDQLLVDLLDAHVQGGTTMEP
Ga0335398_106074422	3300032435	Freshwater	MPMVRGGPRWIPVIIMEEVGSWSTYYKDAYGHGEFKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0335398_107262141	3300032435	Freshwater	MSPDITMEEVGCWSTYYIDAYGHGESKMEFYHCHGGGRLLV
Ga0335396_100350398	3300032462	Freshwater	MEEVSCWSTCYKDAYGHGESKMEFHHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0335396_100458161	3300032462	Freshwater	MPMVRGGPRWSPDILIEEVGCWWTYYKDAYGHGESKMEFYHCHGEGRMLVDLKDAHVQGGTKMEP
Ga0335396_100542404	3300032462	Freshwater	MFRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMGFYHCHGGGRLMVDLLDAHVQGGTKMEP
Ga0335396_101557371	3300032462	Freshwater	MQEFGSWSTYYKDAYGHGEPKVEFYHCHGGGWLLVDLLDAHVQGGTKMEP
Ga0335396_102202322	3300032462	Freshwater	MPMVRGGPRWSPDIIMEEVGYWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTTMEP
Ga0335396_102670412	3300032462	Freshwater	MEEVGSWSTYFKDAYGHGESKMEFYHCHGGGRLLSNLLDAHVQGGTKMEP
Ga0335396_104125701	3300032462	Freshwater	QPCKMPMVRGGPRWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQGGTKMEP
Ga0335396_105761661	3300032462	Freshwater	RWSPDIIMEEVGCWSTYYKDAYGHGESKMEFYHCHGGGWLLVASLDAHVQGGTKMEP
Ga0335396_106428832	3300032462	Freshwater	MSPEITMEEVGYWSTYYIDAYDNGESKMEFCRCHGGSRLMVDLLDAHVRGGTKME
Ga0335396_109398321	3300032462	Freshwater	MVRGGPRWSPDIIMEKVGCWSTYYKDAYGHGESKMEFYHCHGGGRLLVDLLDAHVQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080490

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences