NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F077907

Metagenome Family F077907

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077907
Family Type Metagenome
Number of Sequences 117
Average Sequence Length 42 residues
Representative Sequence ITLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Number of Associated Samples 9
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.85 %
% of genes from short scaffolds (< 2000 bps) 0.85 %
Associated GOLD sequencing projects 5
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.34%    β-sheet: 0.00%    Coil/Unstructured: 53.66%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF00078RVT_1 1.71
PF00232Glyco_hydro_1 0.85
PF01204Trehalase 0.85
PF00630Filamin 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG1626Neutral trehalaseCarbohydrate transport and metabolism [G] 0.85
COG2723Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidaseCarbohydrate transport and metabolism [G] 0.85

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002185|JGI20163J26743_11116275Not Available935Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut100.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001544Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002125Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4Host-AssociatedOpen in IMG/M
3300002127Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3Host-AssociatedOpen in IMG/M
3300002175Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5Host-AssociatedOpen in IMG/M
3300002185Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300027891Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)Host-AssociatedOpen in IMG/M
3300027904Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027960Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)Host-AssociatedOpen in IMG/M
3300027984Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20163J15578_1009431053300001544Termite GutSSTSDQQLENHSTKYHRQQPLYNTLELLMMDIVVLETC*
JGI20163J15578_1012214813300001544Termite GutILQTGHITLSSTSDQQLENQSTKYHRQQPLYNTLELLMMGIVVTETC*
JGI20163J15578_1021263013300001544Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMLGIVVPETC*
JGI20163J15578_1023147113300001544Termite GutTLSSTSDQQLENHSTKYQRQQPLYNNPELLMMGIVVPETC*
JGI20163J15578_1026097113300001544Termite GutPDQQPEKHSTKYYRQQPLYNTLELLMMDIVVPETC*
JGI20163J15578_1030836023300001544Termite GutHITLSSTSDQQLENHSTKYHRQQPLYNALELLIMGIVVPETC*
JGI20163J15578_1031185413300001544Termite GutILQTGHITLSSTSDQQLENHSTKYHRQHPLYNILELLMMGIVVPETC*
JGI20163J15578_1031727213300001544Termite GutPDTQPSATSDQQLENHSTKYHRQQPLYNTLDLLMMGTVVPETC*
JGI20163J15578_1038852613300001544Termite GutTPDQQLENHSTKYHRQQPLYNTLELLMMDLVMPETR*
JGI20163J15578_1051726613300001544Termite GutLSSTSDQQLENHSTNYHRQQPLCNTLELLMMGIVVPETC*
JGI20163J15578_1067004713300001544Termite GutGHITLSSTSDQQLENHSTKYHRQQPLYNTLDLLMIGIVMFETC*
JGI20163J15578_1069688413300001544Termite GutGVELSSTSDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC*
JGI20163J15578_1073431913300001544Termite GutLSSTPDQQLENHSTKYHMQQPLYNTLDLLMMGIVXPETC*
JGI20165J26630_1007911433300002125Termite GutMLQHPANRTHNPQLENHSTKYHRQQPLYNTLDLLMMGIVVP
JGI20165J26630_1016053213300002125Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGVVVPETC*
JGI20165J26630_1049101613300002125Termite GutTLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETY*
JGI20165J26630_1065714213300002125Termite GutIPDQQLENHSTKYHRQQPLYNTLDLLMMGVVVPETC*
JGI20165J26630_1066431513300002125Termite GutLSSTSDQQLENHSTKYHRQQPLYNNLELLMMGIMVTGTC*
JGI20165J26630_1072993013300002125Termite GutPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETY*
JGI20164J26629_1011549113300002127Termite GutSATSDQQLENHSTKYHRQQPLYNTLDLLMMGTVVPETC*
JGI20166J26741_1006266423300002175Termite GutMPTRYITLSSTSDQQLENHSTKYHRQQPLYNTPELLMMGMVVPETC*
JGI20166J26741_1011501413300002175Termite GutTGHITLSSTSDQQLENHSTKYHRQQPLYNTLEFMMMGIVVPETC*
JGI20166J26741_1086080413300002175Termite GutSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVLPETC*
JGI20166J26741_1089470563300002175Termite GutSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPDTC*
JGI20166J26741_1122046053300002175Termite GutAGCCSILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVPGTC*
JGI20166J26741_1144891613300002175Termite GutGHITLSSTPDQQLENQSTKYHRQQPLYNTLELLMMGVVVPKTC*
JGI20166J26741_1146381113300002175Termite GutQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGKVVPETY*
JGI20166J26741_1152380623300002175Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIMVPETR*
JGI20166J26741_1168386113300002175Termite GutSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPEIC*
JGI20166J26741_1169353923300002175Termite GutDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETF*
JGI20166J26741_1176610123300002175Termite GutPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPDTC*
JGI20166J26741_1183900013300002175Termite GutLSSTSDQQLENHSTKYHRQQPLYNTLELLMMDIVLPETC*
JGI20166J26741_1186724613300002175Termite GutGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLVMVILVPETC*
JGI20166J26741_1188741933300002175Termite GutITLSSTPDQQLENHSTKYHRQQPLYNTLDLLVMGIVVPETC*
JGI20166J26741_1196611323300002175Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC*
JGI20166J26741_1202916513300002175Termite GutITLSSTSDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC*
JGI20166J26741_1205507213300002175Termite GutSILQTGHITLSSTSDQQLENHSTKYHRQQPLYNNLELLMMGIVEPETC*
JGI20166J26741_1212765613300002175Termite GutILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTFELLTMGIVVLETC*
JGI20166J26741_1221300913300002175Termite GutSSTPDQQLENQSTKYHRQQPLYNTLELLMMDIVMPETC*
JGI20166J26741_1225259613300002175Termite GutQTGHITLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC*
JGI20166J26741_1228199723300002175Termite GutTLSSTPDQQLENQSTKYHRQQPLYNTLELLMMGIVMPETC*
JGI20163J26743_1043243713300002185Termite GutSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVLETC*
JGI20163J26743_1046313323300002185Termite GutPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPKTC*
JGI20163J26743_1066334613300002185Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLPMMGIVVTETC*
JGI20163J26743_1080083613300002185Termite GutRILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVLETC*
JGI20163J26743_1083588113300002185Termite GutLQTGHITLSSTPDQQLEKHSTKYQRQQPLYNTLDLLMMDVVVPETC*
JGI20163J26743_1096362213300002185Termite GutDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETW*
JGI20163J26743_1099428513300002185Termite GutILCSTPDQQLENHSTKYHRQQPLYNTLDLLMTGIVVPETC*
JGI20163J26743_1105962233300002185Termite GutQTGHITLSSTPDQQLENHSTKYHRQQPLYNTLDLLVMGIVVPETC*
JGI20163J26743_1109477613300002185Termite GutSSTPDQQLENHSTKYHRQQQLYNTLDLLMMGIVMPETC*
JGI20163J26743_1111627523300002185Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIEVPETC*
JGI20163J26743_1131105433300002185Termite GutAPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPKTC*
JGI20163J26743_1138453013300002185Termite GutDQQLENHSTKYHRQQPLYNTLELLMMDIVVPEIC*
JGI20163J26743_1138592433300002185Termite GutAASCKPDTQPSATSDQQLENHSTKYHRQQPLYNTLDLLMMGTVVPETC*
JGI20163J26743_1143594313300002185Termite GutCSILQTGHITLSSTSDQQLENHSAKYHRQEPPYNTFELLMMGIVVPETC*
JGI20163J26743_1145566013300002185Termite GutLSSTSDQQLENHSTKYHRQQPLYNTLELLMMDIVVLETC*
Ga0209628_1000656663300027891Termite GutHIILQTGHITLSSTSDQQLENHSTKYHRQQPLYNALELLIMGIVVPETC
Ga0209628_1005568213300027891Termite GutTLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETY
Ga0209628_1010482823300027891Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIMMPETC
Ga0209628_1013678233300027891Termite GutGHITLSSTPDQQLENHSTKYHRQQPLYNTLDLMMMGIVVPETC
Ga0209628_1013724913300027891Termite GutSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209628_1013899733300027891Termite GutFAGCCRILQTGHITLSSTSDQQLENHSTKYHRQQLLYNTLELLMMGIVVPEIR
Ga0209628_1015133713300027891Termite GutAEHITLSSTPDQQLENQSTKYHRQQPLYNTLELLMMGVVVPKTC
Ga0209628_1019114853300027891Termite GutILQTGHITLSSTPDQQLENQSTKYHRQKPLYNTLELPMMGIVVPETC
Ga0209628_1019287113300027891Termite GutGHITLSSTSDQQLENHSAKYHRQEPPYNTFELLMMGIVVPETC
Ga0209628_1029383113300027891Termite GutLQTGYITLSSTSDQQLENHSTKYHRQPSLYNTLELLMMGIVVPETC
Ga0209628_1030034723300027891Termite GutVRFAGCCSILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVPETC
Ga0209628_1034800313300027891Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209628_1042140113300027891Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Ga0209628_1046039113300027891Termite GutCCSILQTGQITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVPETC
Ga0209628_1053431713300027891Termite GutVRFAGCCIILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVPGTC
Ga0209628_1056568323300027891Termite GutGILQTGHITLSSTPDQQLENQSTKYHRQRPLYNTLELLMMGIVVPETC
Ga0209628_1059487313300027891Termite GutITLSSVPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209628_1077668313300027891Termite GutQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMIGIVVPETC
Ga0209628_1096629313300027891Termite GutTGHITLSSTSDQQLENHSTKYHRQQPLYNTLDLLMIGIVMFETC
Ga0209628_1104946823300027891Termite GutMPTRYITLSSTSDQQLENHSTKYHRQQPLYNTPELLMMGMVVPETC
Ga0209737_1000856713300027904Termite GutTLSSTPDQQLENHSTKYHRQQQLYNTLDLLMMGIVMPETC
Ga0209737_1009759713300027904Termite GutTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Ga0209737_1014124213300027904Termite GutILQTGHITLNSTPDQQLENQSTKYHRQQPLYNTLELLMMGIVVPETC
Ga0209737_1021086313300027904Termite GutGHIALSSTSDQQLENHSTKYHRQQPLYNTLDLLMMDIVMPETC
Ga0209737_1029301113300027904Termite GutMALQWQTGPITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVMPETC
Ga0209737_1040455813300027904Termite GutLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIMVPRNMFST
Ga0209737_1040747213300027904Termite GutSILQTGHITLSSTPDQQAENHSTNYHRQQPLYNTLDLLMMGIVVPETC
Ga0209737_1047869213300027904Termite GutILQTGHITLSSTPDQQLENQSTKYHRQQSLYNTLELLMMGIVVLETC
Ga0209737_1049856513300027904Termite GutLSSTPDQQLENQSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209737_1050192113300027904Termite GutSATSDQQLENHSTKYHRQQPLYNTLDLLMMGTVVPETC
Ga0209737_1052048523300027904Termite GutVRFAGCCRILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVLETC
Ga0209737_1068252613300027904Termite GutITLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209737_1068996433300027904Termite GutTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIMLPETC
Ga0209737_1074884213300027904Termite GutFAGCYGILQTGRITLSPTPDQQLENQSTKYHRQQPLYNTLELLMMGIVVLETC
Ga0209737_1076613723300027904Termite GutAGYCSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVMPETC
Ga0209737_1084422813300027904Termite GutLQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMIGIVVPETC
Ga0209737_1087603213300027904Termite GutSSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209737_1101867713300027904Termite GutGHITLSSTSDQQLENQSSKYHRQEPPYNNLQLLMMGIVVPETC
Ga0209737_1108256013300027904Termite GutTLSSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209737_1129400423300027904Termite GutLQTGHITLSSTSDQQLENHSTKYHRQQPLYNTFELLTMGIVVLETC
Ga0209627_111942413300027960Termite GutITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIMLPETC
Ga0209627_121474413300027960Termite GutMCCSILQTGHITLSSTPDQQLENQSTKYHRQQPLYNNTLELLMMGIVVP
Ga0209627_129445913300027960Termite GutSGVELSSTSDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209627_130589523300027960Termite GutLSSTPDQQLENHSTKYHMQQPLYNTLDLLMMGIVMPETC
Ga0209629_1020302823300027984Termite GutTGHIALSSTSDQQLENHSTKYHRQQPLYNTLDLLMMDIVMPETC
Ga0209629_1023518023300027984Termite GutGHITLSSTPDQQLENHSTKYHRQQPLYNTLDLLMVDIVVPETC
Ga0209629_1025453623300027984Termite GutTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209629_1026965423300027984Termite GutQTGYITLSSTSDQQLENHSTKYHRQPSLYNTLELLMMGIVVPETC
Ga0209629_1031349813300027984Termite GutSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Ga0209629_1034051713300027984Termite GutSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Ga0209629_1041910513300027984Termite GutQFAGCCSILQTGHITLSSTPDQQLENQSTKYHRQQPLYNTLELLMMGIVVPETC
Ga0209629_1044571613300027984Termite GutITLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMVIVVPETC
Ga0209629_1048291113300027984Termite GutGCCGILQTGHITLSSTPDQQLENQSTKYHRQRPLYNTLELLMMGIVVPETC
Ga0209629_1050404423300027984Termite GutEHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIVVSETC
Ga0209629_1057550613300027984Termite GutITLSSTPDQQLENHSTKYHRQQPLYNTLDLLMMGIVVPETC
Ga0209629_1059060113300027984Termite GutQTRHITLSSTPDQQLENQSTKYHRQQPLYNTLELLMMGIVVPETC
Ga0209629_1073427813300027984Termite GutLSSTSDQQLENQSSKYHRQEPPYNNLQLLMMGIVVPETC
Ga0209629_1076331113300027984Termite GutILQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMVIVVPETC
Ga0209629_1079424213300027984Termite GutHITLSSTSDQQLENHSTKYHRQQPLYNTLELLMMGIMVP
Ga0209629_1080992413300027984Termite GutSTPDQQLENHSTKYHRQQPLYNTLELLMMDIVVPETC
Ga0209629_1104149213300027984Termite GutQTGHITLSSTSDQQLENHSTKYHRQQPLYNTLDLLMMDIVMPETC

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.