Metagenome / Metatranscriptome Family F075393

Basic Information
Family ID	F075393
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	59 residues
Representative Sequence	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVV
Number of Associated Samples	112
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.48 %
% of genes near scaffold ends (potentially truncated)	78.15 %
% of genes from short scaffolds (< 2000 bps)	58.82 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (63.025 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.773 % of family members)
Environment Ontology (ENVO)	Unclassified (39.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.866 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.27% β-sheet: 5.45% Coil/Unstructured: 87.27%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00078	RVT_1	68.07
PF08388	GIIM	1.68
PF13408	Zn_ribbon_recom	0.84
PF02371	Transposase_20	0.84
PF00589	Phage_integrase	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.03 %
Unclassified	root	N/A	36.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.03 %
Unclassified	root	N/A	36.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.03 %
Unclassified	root	N/A	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.17 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.68 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.84 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.68 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	0.84 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.68 %
Nannocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae	0.84 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.84 %
unclassified Methylosinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.68 %
Nannocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis	0.84 %
Methylosinus sp. C49	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	0.84 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.68 %
Nannocystis exedens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	0.84 %
Methylosinus sp. C49	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	0.84 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10130905	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10110902	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300002245\|JGIcombinedJ26739_100152369	Not Available	2185	Open in IMG/M
3300004633\|Ga0066395_10226563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	991	Open in IMG/M
3300005363\|Ga0008090_15717946	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005610\|Ga0070763_10037562	Not Available	2248	Open in IMG/M
3300005994\|Ga0066789_10031108	Not Available	2366	Open in IMG/M
3300006041\|Ga0075023_100098647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1006	Open in IMG/M
3300006047\|Ga0075024_100030433	All Organisms → cellular organisms → Bacteria	2207	Open in IMG/M
3300006050\|Ga0075028_100186857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1112	Open in IMG/M
3300006057\|Ga0075026_100081955	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300006163\|Ga0070715_10023457	Not Available	2417	Open in IMG/M
3300009525\|Ga0116220_10198792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	868	Open in IMG/M
3300010043\|Ga0126380_10093974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1778	Open in IMG/M
3300010043\|Ga0126380_10197058	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300010047\|Ga0126382_11470231	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300010147\|Ga0126319_1019883	Not Available	2260	Open in IMG/M
3300010360\|Ga0126372_10844985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	912	Open in IMG/M
3300010362\|Ga0126377_12406292	Not Available	603	Open in IMG/M
3300010376\|Ga0126381_101767432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	893	Open in IMG/M
3300010376\|Ga0126381_103144644	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010379\|Ga0136449_100132816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4953	Open in IMG/M
3300010398\|Ga0126383_10319554	Not Available	1560	Open in IMG/M
3300010868\|Ga0124844_1047783	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300011120\|Ga0150983_11196746	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012096\|Ga0137389_11376208	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012200\|Ga0137382_10045989	All Organisms → cellular organisms → Bacteria → Proteobacteria	2703	Open in IMG/M
3300014156\|Ga0181518_10386401	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300014489\|Ga0182018_10454173	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300014501\|Ga0182024_10224592	All Organisms → cellular organisms → Bacteria	2542	Open in IMG/M
3300015242\|Ga0137412_10044936	Not Available	3604	Open in IMG/M
3300016319\|Ga0182033_10648639	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300016371\|Ga0182034_11286203	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300016387\|Ga0182040_11932081	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300016404\|Ga0182037_11187734	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300017924\|Ga0187820_1130799	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300017946\|Ga0187879_10058335	Not Available	2260	Open in IMG/M
3300017975\|Ga0187782_10297011	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300017975\|Ga0187782_10879834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	694	Open in IMG/M
3300018009\|Ga0187884_10045208	Not Available	2087	Open in IMG/M
3300018038\|Ga0187855_10057692	Not Available	2397	Open in IMG/M
3300018040\|Ga0187862_10650562	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300018042\|Ga0187871_10026806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3644	Open in IMG/M
3300018062\|Ga0187784_10713461	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300020150\|Ga0187768_1007368	Not Available	2228	Open in IMG/M
3300020579\|Ga0210407_10180999	Not Available	1633	Open in IMG/M
3300020580\|Ga0210403_10109774	Not Available	2240	Open in IMG/M
3300020581\|Ga0210399_10117804	Not Available	2180	Open in IMG/M
3300021171\|Ga0210405_10024461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4869	Open in IMG/M
3300021178\|Ga0210408_10104031	Not Available	2232	Open in IMG/M
3300021404\|Ga0210389_10914913	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300021405\|Ga0210387_10226438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300021432\|Ga0210384_10089212	Not Available	2769	Open in IMG/M
3300021559\|Ga0210409_10017059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7134	Open in IMG/M
3300021559\|Ga0210409_10059636	Not Available	3569	Open in IMG/M
3300022508\|Ga0222728_1000931	Not Available	2598	Open in IMG/M
3300022509\|Ga0242649_1031055	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300022522\|Ga0242659_1027999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	906	Open in IMG/M
3300022528\|Ga0242669_1001746	Not Available	2072	Open in IMG/M
3300022533\|Ga0242662_10032051	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300022708\|Ga0242670_1017505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300022715\|Ga0242678_1000931	Not Available	2133	Open in IMG/M
3300022720\|Ga0242672_1000825	Not Available	2298	Open in IMG/M
3300022721\|Ga0242666_1201102	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300022722\|Ga0242657_1002082	Not Available	2584	Open in IMG/M
3300022726\|Ga0242654_10004662	Not Available	2613	Open in IMG/M
3300022726\|Ga0242654_10034193	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300025905\|Ga0207685_10015697	Not Available	2406	Open in IMG/M
3300026291\|Ga0209890_10030003	Not Available	2084	Open in IMG/M
3300026494\|Ga0257159_1053382	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300026824\|Ga0207723_117342	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300026847\|Ga0207802_1002188	Not Available	1820	Open in IMG/M
3300026909\|Ga0207858_1001978	Not Available	2155	Open in IMG/M
3300027003\|Ga0207722_1024078	Not Available	666	Open in IMG/M
3300027014\|Ga0207815_1003531	Not Available	2198	Open in IMG/M
3300027043\|Ga0207800_1006448	Not Available	2270	Open in IMG/M
3300027565\|Ga0209219_1060059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	948	Open in IMG/M
3300027583\|Ga0209527_1008254	Not Available	2176	Open in IMG/M
3300027633\|Ga0208988_1008629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2530	Open in IMG/M
3300027635\|Ga0209625_1025464	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300027855\|Ga0209693_10035385	Not Available	2444	Open in IMG/M
3300027910\|Ga0209583_10017216	Not Available	2236	Open in IMG/M
3300027915\|Ga0209069_10047981	Not Available	2006	Open in IMG/M
3300028047\|Ga0209526_10185624	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300028906\|Ga0308309_10087918	Not Available	2369	Open in IMG/M
3300029701\|Ga0222748_1001146	Not Available	2355	Open in IMG/M
3300031231\|Ga0170824_125097432	Not Available	674	Open in IMG/M
3300031572\|Ga0318515_10277064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900	Open in IMG/M
3300031720\|Ga0307469_10242018	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300031740\|Ga0307468_100227139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300031744\|Ga0306918_11434698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	529	Open in IMG/M
3300031747\|Ga0318502_10974330	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031753\|Ga0307477_10023645	Not Available	4197	Open in IMG/M
3300031768\|Ga0318509_10551101	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031770\|Ga0318521_10578189	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300031778\|Ga0318498_10396978	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031823\|Ga0307478_10117331	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300031879\|Ga0306919_10224113	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300031880\|Ga0318544_10098055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1103	Open in IMG/M
3300031890\|Ga0306925_10138166	Not Available	2618	Open in IMG/M
3300031890\|Ga0306925_10902929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	908	Open in IMG/M
3300031896\|Ga0318551_10103000	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300031941\|Ga0310912_10362059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1127	Open in IMG/M
3300032035\|Ga0310911_10375968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	821	Open in IMG/M
3300032039\|Ga0318559_10207776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	901	Open in IMG/M
3300032043\|Ga0318556_10485676	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300032059\|Ga0318533_10090643	Not Available	2101	Open in IMG/M
3300032065\|Ga0318513_10023982	Not Available	2581	Open in IMG/M
3300032076\|Ga0306924_12519360	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300032089\|Ga0318525_10135488	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300032160\|Ga0311301_10478012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1860	Open in IMG/M
3300032174\|Ga0307470_10027105	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300032205\|Ga0307472_102500033	Not Available	525	Open in IMG/M
3300032261\|Ga0306920_100986610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	1227	Open in IMG/M
3300032261\|Ga0306920_101563550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	939	Open in IMG/M
3300032783\|Ga0335079_10197542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2233	Open in IMG/M
3300032828\|Ga0335080_10133607	All Organisms → cellular organisms → Bacteria	2751	Open in IMG/M
3300033289\|Ga0310914_10137028	Not Available	2146	Open in IMG/M
3300034090\|Ga0326723_0108360	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Aquatic	Environmental → Aquatic	11.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.39%
Freshwater	Environmental → Aquatic → Freshwater	6.72%
Sediment	Environmental → Aquatic → Sediment	5.04%
Peat	Environmental → Terrestrial → Peat	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.18%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.04%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.04%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.20%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.52%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.84%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.84%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.84%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027043	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101309051	3300000597	Forest Soil	MLEIGASGSVGGEGGNILVYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVAM
AF_2010_repII_A001DRAFT_101109022	3300000793	Forest Soil	MLEIGASGSVGGEGGNILVYPATWPAMPREKAQTAPTVRLKVPMRRRGADC
JGIcombinedJ26739_1001523691	3300002245	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRR
Ga0066395_102265631	3300004633	Tropical Forest Soil	MLEIGTSGSVGDEGGNILVYPATCSPMPRDKSQAAPTARARVPKRSAGTEQPVVVTKA
Ga0008090_157179462	3300005363	Tropical Rainforest Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQTAPTVRLKVPMRRRGADCLVVA
Ga0070763_100375623	3300005610	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARG
Ga0066789_100311081	3300005994	Soil	MLEFGTSGSVGGEGGNILVYPATWPAMPREKVQAAPTARPKVPMRRGGADCFVVAMKRGNARGAKEAGHRRWIGSTDVG*
Ga0075023_1000986471	3300006041	Watersheds	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTVRLKVPMRRRGADCLVVATKWGN
Ga0075024_1000304333	3300006047	Watersheds	MGEICASGSVGGEGGNVLAYPATWPAMPRGKAQAAPTARPKVPMRRRGADCPVVVMKR
Ga0075028_1001868572	3300006050	Watersheds	MGEICASGSVGGEGGNVLAYPATCSPMPRDKPQAAPTARARVPKRSAGAEQP
Ga0075026_1000819552	3300006057	Watersheds	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAK
Ga0070715_100234574	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGEICASGSVGGEGGNVLAYPATWPAMLREKEQAAPTVRLKVPMRRRGADCPVVVLKRV*
Ga0116220_101987921	3300009525	Peatlands Soil	MGEICASGSVGGEGGNVLAYPATWPAMPRENAQAAPTARPKVPMRRRGADCPVVVMKR
Ga0126380_100939742	3300010043	Tropical Forest Soil	VKNRMLEIGTSGTVRGEAGNILTYSASCSSMPREKPQAVPAARATVPKRRAGAEQPVVVMKAL*
Ga0126380_101970582	3300010043	Tropical Forest Soil	MGEICASGSVGGEGGNFLAYPATWPAMPREKAQAAPTVRLKVPMRRRGADCLIVAMKWGNAHGAKGVGHRC*
Ga0126382_114702312	3300010047	Tropical Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKVPMRRRGADC
Ga0126319_10198833	3300010147	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVALKRGNAR
Ga0126372_108449851	3300010360	Tropical Forest Soil	MLEIGTSGSVGDEGGNILVYPATCSPMPRDKSQAAPTARARVPKRSAGTEQPVVVT
Ga0126377_124062921	3300010362	Tropical Forest Soil	MRESRTFGSVGGEGGNVLAYPATWPAMPREKARAAPTARPKVPMRRRGADCLVVALKRGNARGAKG
Ga0126381_1017674322	3300010376	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTVRLKVPMRR
Ga0126381_1031446442	3300010376	Tropical Forest Soil	MLEIGTSGSVGDEGGNILVYPATCSPMPRDKSRAAPTARARVPKRSAGTEQP
Ga0136449_1001328164	3300010379	Peatlands Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKVQAAPTARPKVPMRRRGADCPVVVMKRGNARGAKGAGHRR*
Ga0126383_103195542	3300010398	Tropical Forest Soil	MKRISPVRNRMLEIGTSGSVGDEGGNILVYPATYTAMLREKAQAAPTARPKVPMRRLGAHCLVVVMKRG
Ga0124844_10477832	3300010868	Tropical Forest Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAKG
Ga0150983_111967462	3300011120	Forest Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPIARLKVPMRRRGADCPVVVTKRGNARGA
Ga0137389_113762082	3300012096	Vadose Zone Soil	MGEICASGSVGGEGGNVLAYPATWPVMPREKVQAAPTARPKVPMRRRGADCPVVVT
Ga0137382_100459892	3300012200	Vadose Zone Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAKGAGHRR*
Ga0181518_103864012	3300014156	Bog	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADC
Ga0182018_104541731	3300014489	Palsa	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKAPMRRRGADCPVVVMKRGNAR
Ga0182024_102245921	3300014501	Permafrost	MGEICASGSVGGEGGNVLAYPATWPAMAREKVQAAPTARPKVPMRRRGADCPVVVTKRGNARGAKGAGHRR*
Ga0137412_100449362	3300015242	Vadose Zone Soil	MGEICASGSVGGEGGNLLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVVLKRGNARGAKGVGHRL*
Ga0182033_106486392	3300016319	Soil	MGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGAHCLVVVMKRGNAR
Ga0182034_112862032	3300016371	Soil	MGEICASGSVGGEGGNVLAYPATYTAMLREKVQAAPTARPKVPMRRLGAHCLVVVMKRGNARGAKGVGHQRW
Ga0182040_119320812	3300016387	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADC
Ga0182037_111877341	3300016404	Soil	MGEICASGSVGGEGGNVLAYPATWPVMPREKAQAAPTARLKVPMRRRGADCPVVV
Ga0187820_11307991	3300017924	Freshwater Sediment	MGEICASGSVGGEGGNALVYPATWPAMLREKAQAAPTARLKVPMRRRGADCLVVVLKRV
Ga0187879_100583353	3300017946	Peatland	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKVPMRRRGADCPVVVMKRGNAR
Ga0187782_102970112	3300017975	Tropical Peatland	MREFCSSGSVGGEGGNRLAYPATWPAMPREKAQAAPTVRLKVPMRRRGADCLVVATKWGNAHGA
Ga0187782_108798341	3300017975	Tropical Peatland	MRESRSSGSVGGEGGNALAYPATYTAMLREKAQAAPTARPKVPMRRLGA
Ga0187884_100452083	3300018009	Peatland	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKVPMRRRGADCP
Ga0187855_100576923	3300018038	Peatland	MGEICASGSVGGEGGNVLAYPATWPAMPKEKAQAALTARPKVPMRRRGADCPVVVMKRGNARGAKGAGHRR
Ga0187862_106505621	3300018040	Peatland	MGEICASGSVGGEGGNVLAYPATWPAMSREKAQAAPTARLKVPMRRRG
Ga0187871_100268063	3300018042	Peatland	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKVPMRRRGADCPVVVMKRGNARGAKGAGHRR
Ga0187784_107134612	3300018062	Tropical Peatland	MREICASGSVGGEGGNALVYPATWPAMLREKAQAAQTARPKVSMRRRGADCLVLVM
Ga0187768_10073684	3300020150	Tropical Peatland	MGEICASGSVGGEGGNVLAYPATWPAMPRDKAQAAPTARPKVPMRRRGADCPVVAT
Ga0210407_101809991	3300020579	Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVVTKRGNARGA
Ga0210403_101097743	3300020580	Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVV
Ga0210399_101178041	3300020581	Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVVTKRGNARG
Ga0210405_100244611	3300021171	Soil	MGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGAHCLVVALKRGNAR
Ga0210408_101040311	3300021178	Soil	MGEICASGSVGGEGGNVLAYPATCSPMSRDKPQAAPTARARVPRRSAGAEQPVV
Ga0210389_109149131	3300021404	Soil	MGEICASGSVGGEGGNALAYPATWPAMLREKAQAAPTVRLKVPMRRRGADCLVVATKWGNAHG
Ga0210387_102264381	3300021405	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMCRRGAHRLVV
Ga0210384_100892124	3300021432	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPRGKAQAAPTARPKVPMRRRGADCPVVATKRGNARGAKGAGHRR
Ga0210409_100170598	3300021559	Soil	MGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGAHCLVVALKRGNARGAKGVGHQRWIGSTGAGRLAAGGAR
Ga0210409_100596363	3300021559	Soil	MREICASGSVGGEGGNALVYPATCSPMSRDKPQAAPTARARVPKRSAGTEQPVVVMKAL
Ga0222728_10009311	3300022508	Soil	MGEICASGSVGGEGGNALAYPATCSPMPRDKPQAAPTARARVPKRGAGTEQPVVVTKAL
Ga0242649_10310551	3300022509	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCSVVVMK
Ga0242659_10279991	3300022522	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVPMRRRGA
Ga0242669_10017461	3300022528	Soil	MGEICASGSVGGEGGNVLAYPATWPGMTREKAQAAPTARPKVPMCRRGADCPVVVMKRGNARGAKGAGHRR
Ga0242662_100320511	3300022533	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGA
Ga0242670_10175051	3300022708	Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAK
Ga0242678_10009311	3300022715	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVPMRRRGADCPVVVMKRGN
Ga0242672_10008251	3300022720	Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVTKRGNARGAK
Ga0242666_12011021	3300022721	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVAMRRR
Ga0242657_10020822	3300022722	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVPMCRRGADCLVVVLKRL
Ga0242654_100046621	3300022726	Soil	MGEICASGSVGGEGGNALAYPATWPAMLREKAQAAPTVRLKVPMRRRGADCLVVATKWGNAHGAKGVGHRR
Ga0242654_100341932	3300022726	Soil	MGEICASGSVGGEGGNALVYPATCSPMSRDKPQAAPTARARVPRRSAGAEQPVV
Ga0207685_100156974	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGEICASGSVGGEGGNALAYPATWPAMLREKAQAAPTVRLKVPMRR
Ga0209890_100300031	3300026291	Soil	MLEFGTSGSVGGEGGNILVYPATWPAMPREKAQAAPTARPKVPMRRRGAH
Ga0257159_10533821	3300026494	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRG
Ga0207723_1173422	3300026824	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWTAMPREKAQAAPTARPKVPMRRR
Ga0207802_10021881	3300026847	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWTAMPREKAQAAPTARLKVPMRRRGA
Ga0207858_10019781	3300026909	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWTAMPREKAQAAPTARPKVPMRRRG
Ga0207722_10240782	3300027003	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWTAMPREKAQAAPTARPKVPMRRRGADCLVVAMKRGNAR
Ga0207815_10035311	3300027014	Tropical Forest Soil	MREICASGSVGGEGGNALVYPATWTAMPREKAQAAPTARPKVPMRRRGADCLVVVTKRGNARGAKGAGHR
Ga0207800_10064481	3300027043	Tropical Forest Soil	MREICASGSVGGEGGNVLAYPATWPAMPREKAQVAPTARPKVPMRRRGADCPVVVRHRLCRPTANETLVSHC
Ga0209219_10600591	3300027565	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKVQAAPTARPKVPMRRRGADCPVVVTKRGNARG
Ga0209527_10082543	3300027583	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGAD
Ga0208988_10086291	3300027633	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARLKVPMRRRGADCLVVVMKRGNARGAKGAGHRR
Ga0209625_10254641	3300027635	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPRGKAQAAPTARPKVPMRRRGAD
Ga0209693_100353854	3300027855	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPRGKAQAAPTARPKVPMRRRGADCPVVATKRVNARR
Ga0209583_100172161	3300027910	Watersheds	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAKG
Ga0209069_100479811	3300027915	Watersheds	MGEICASGSVGGEGGNVLAYPATWPAMPRGKAQAAPTARPKVPMRRRGADCPVVVMK
Ga0209526_101856242	3300028047	Forest Soil	MGEICASGSVGGEGGNVLAYPATCSPMSRDKPQAAPTARARVPKRSAGAEQ
Ga0308309_100879183	3300028906	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPKEKAQAAPTARPKVPMRRRGADCPVVATKRGNARGAKGAGHRR
Ga0222748_10011461	3300029701	Soil	MGEICASGSVGGEGGNVLAYPATWPAMTREKAQAAPTARPKVPMRRRGADCPVVVMKRGNARGAKGVGHRL
Ga0170824_1250974322	3300031231	Forest Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPIRRRGADC
Ga0318515_102770641	3300031572	Soil	MGEICASGSVGGEGGNVLAYPATYTAMLREKVQAAPTARPKVPMRRLGAHCLVVVMKRGNARGAKGVGHQRWIGSTGNGRN
Ga0307469_102420181	3300031720	Hardwood Forest Soil	MGEICASGSVGGEGGNALAYPATWPAMLREKAQAAPTVRLKVPMRRRGA
Ga0307468_1002271393	3300031740	Hardwood Forest Soil	MGEICASGSVGGEGGNALAYPATWPAMPREKVQAAPTARPKVPMRRRGADCLVVAT
Ga0306918_114346981	3300031744	Soil	NRMGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGADCFVVVRKR
Ga0318502_109743302	3300031747	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADCPVVVTK
Ga0307477_100236452	3300031753	Hardwood Forest Soil	MREICASGSVGGEGGNALVYPATYTAMLREKAQAAPTARPKVPMRRLGAHCLVVVCHRLCRPTAK
Ga0318509_105511012	3300031768	Soil	MGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGAHCLVVVMKRGNARGAKGVGHRR
Ga0318521_105781892	3300031770	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADCPV
Ga0318498_103969781	3300031778	Soil	MREICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVALKRGN
Ga0307478_101173311	3300031823	Hardwood Forest Soil	MREICASGSVGGEGGNALVYPATCSPMSRDKPQAAPTARARVPKRSAGTEQPVE
Ga0306919_102241131	3300031879	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADCPVVVTKRGNARGAKGAG
Ga0318544_100980551	3300031880	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKVQAAPTVRPKVPMRRRGADCSVLAMKRGNARGAKGAGYRH
Ga0306925_101381663	3300031890	Soil	MGEICASGSVGGEGGNVLAYPATYTAMPREKAQAAPTARPKVPMRRLGAHCLVVVMKRGNARGA
Ga0306925_109029291	3300031890	Soil	MLEIGTSGSVGDEGGNILVYPATLPAMPREKAQAAPIARPKVPMRRGGADCPVVA
Ga0318551_101030001	3300031896	Soil	MGEICASGSVGGEGGNVLAYPATYTAMLREKTQVATTTRSKVPMRRLGAHCLVVVMKR
Ga0310912_103620591	3300031941	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCLVVALKRGN
Ga0310911_103759681	3300032035	Soil	MLEIGTSGSVGDEGGNILVYPATLPAMPREKAQAAPIARPKVPMRRGGADCPVVAMK
Ga0318559_102077761	3300032039	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTVRLKVPMRRRGADCPVVVTKRGNARG
Ga0318556_104856761	3300032043	Soil	MGEICASGSVGGEGGNVLAYPATYTAMLREKVQAAPTARPKVPMRRLGAHCLVVVMKRGNARGAKGV
Ga0318533_100906431	3300032059	Soil	MGEICASGSVGGEGGNVLAYPATCTVMPREKAQVATTTRPKVPMHRTGADCLVVATKWGNAHGAKGVGHRR
Ga0318513_100239821	3300032065	Soil	MGEICASGSVGGEGGNVLAYPATYTAMLREKVQAAPTARPKVPMRRLGACPSIRKSPSPA
Ga0306924_125193601	3300032076	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADCP
Ga0318525_101354882	3300032089	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPV
Ga0311301_104780123	3300032160	Peatlands Soil	MGEICASGSVGGEGGNVLAYPATWPAMPRENAQAAPTARPKVPMRRRGADCPVVVM
Ga0307470_100271053	3300032174	Hardwood Forest Soil	MGEICASGSVGGEGGNALAYPATWPAMLREKAQAAPTVRLKVPMRRRGADCLVVATKWGNAHGAKEVGHRR
Ga0307472_1025000331	3300032205	Hardwood Forest Soil	MRESRTFGSVGGEGGNILAYPATWPAMLREKAQAAPTVRLKVPMRRRGADCLVV
Ga0306920_1009866102	3300032261	Soil	MKNRMLEIGTYGTVRGEGGNILTYSATWPAMVREKAQAAPTARPKVPMRRRGADCLVVVMRRL
Ga0306920_1015635502	3300032261	Soil	MREICASGSVGGEGGNALVYPATWPAMPREKAQAAPTARLKVPMRRRGADCPVVVT
Ga0335079_101975421	3300032783	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVV
Ga0335080_101336071	3300032828	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVVLKRV
Ga0310914_101370283	3300033289	Soil	MGEICASGSVGGEGGNVLAYPATWPAMPREKAQAAPTARPKVPMRRRGADCPVVV
Ga0326723_0108360_1029_1202	3300034090	Peat Soil	MGEICASGSVGGEGGNALAYPATCSPMPRDKPQAAPTARARVPKRSAGTEQPVVVTKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075393

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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