Metagenome / Metatranscriptome Family F066105

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F066105
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	68 residues
Representative Sequence	VAEPAGKSPAARFSRLFRKAGVFLAKSQWQEALAVFREGEALAQALGDEEKLALFREEIARCRERLSE
Number of Associated Samples	109
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.76 %
% of genes near scaffold ends (potentially truncated)	20.47 %
% of genes from short scaffolds (< 2000 bps)	81.89 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (77.953 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.173 % of family members)
Environment Ontology (ENVO)	Unclassified (28.346 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.606 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.1: Tetratricopeptide repeat (TPR)	d1ihga1	1ihg	0.82847
a.118.8.1: Tetratricopeptide repeat (TPR)	d1qqea_	1qqe	0.81837
a.118.8.2: Transcription factor MalT domain III	d1hz4a_	1hz4	0.81797
a.118.8.0: automated matches	d6kp3a_	6kp3	0.81551
a.29.6.0: automated matches	d1xg2b1	1xg2	0.81217

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF05258	DciA	37.01
PF08471	Ribonuc_red_2_N	11.81
PF02538	Hydantoinase_B	7.09
PF16575	CLP1_P	5.51
PF01381	HTH_3	5.51
PF04273	BLH_phosphatase	3.15
PF03205	MobB	2.36
PF01266	DAO	1.57
PF05378	Hydant_A_N	0.79
PF14833	NAD_binding_11	0.79
PF00793	DAHP_synth_1	0.79
PF00571	CBS	0.79
PF13545	HTH_Crp_2	0.79
PF05050	Methyltransf_21	0.79
PF12728	HTH_17	0.79
PF00211	Guanylate_cyc	0.79
PF13795	HupE_UreJ_2	0.79
PF00082	Peptidase_S8	0.79
PF13417	GST_N_3	0.79
PF01370	Epimerase	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG5512	Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)	General function prediction only [R]	37.01
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	14.17
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	11.81
COG3453	Predicted phosphohydrolase, protein tyrosine phosphatase (PTP) superfamily, DUF442 family	General function prediction only [R]	3.15
COG1763	Molybdopterin-guanine dinucleotide biosynthesis protein	Coenzyme transport and metabolism [H]	2.36
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.57
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.95 %
Unclassified	root	N/A	22.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.95 %
Unclassified	root	N/A	22.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.95 %
Unclassified	root	N/A	22.05 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.73 %
Unclassified	root	N/A	22.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	34.65 %
Unclassified	root	N/A	22.05 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	34.65 %
Unclassified	root	N/A	22.05 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	22.83 %
Unclassified	root	N/A	22.05 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	3.15 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	22.83 %
Unclassified	root	N/A	22.05 %
Syntrophotaleaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Syntrophotaleaceae	0.79 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.79 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	22.83 %
Unclassified	root	N/A	22.05 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.79 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.79 %
Syntrophotalea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Syntrophotaleaceae → Syntrophotalea	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	22.83 %
Unclassified	root	N/A	22.05 %
Syntrophotalea carbinolica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Syntrophotaleaceae → Syntrophotalea → Syntrophotalea carbinolica	0.79 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.79 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105833922	All Organisms → cellular organisms → Bacteria	5110	Open in IMG/M
3300000955\|JGI1027J12803_101048236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577	Open in IMG/M
3300003890\|Ga0063162_1110871	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300004463\|Ga0063356_101764675	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005172\|Ga0066683_10148514	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1439	Open in IMG/M
3300005186\|Ga0066676_10362831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	971	Open in IMG/M
3300005330\|Ga0070690_100826145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Syntrophotaleaceae → Syntrophotalea → Syntrophotalea carbinolica	720	Open in IMG/M
3300005332\|Ga0066388_100859799	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1491	Open in IMG/M
3300005332\|Ga0066388_100888444	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300005332\|Ga0066388_105203667	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300005338\|Ga0068868_100687307	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	914	Open in IMG/M
3300005345\|Ga0070692_10385162	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	881	Open in IMG/M
3300005353\|Ga0070669_100322571	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300005355\|Ga0070671_101034343	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	720	Open in IMG/M
3300005441\|Ga0070700_100096141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1943	Open in IMG/M
3300005445\|Ga0070708_102198445	Not Available	510	Open in IMG/M
3300005468\|Ga0070707_101278076	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	700	Open in IMG/M
3300005529\|Ga0070741_10008287	All Organisms → cellular organisms → Bacteria	20945	Open in IMG/M
3300005615\|Ga0070702_101301239	Not Available	590	Open in IMG/M
3300005617\|Ga0068859_100154624	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2370	Open in IMG/M
3300005713\|Ga0066905_100370640	Not Available	1151	Open in IMG/M
3300005718\|Ga0068866_10721467	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	686	Open in IMG/M
3300005836\|Ga0074470_10642860	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300005842\|Ga0068858_102423076	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300005937\|Ga0081455_10095945	All Organisms → cellular organisms → Bacteria → Proteobacteria	2392	Open in IMG/M
3300005985\|Ga0081539_10004133	All Organisms → cellular organisms → Bacteria	16518	Open in IMG/M
3300006041\|Ga0075023_100061965	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300006050\|Ga0075028_100047450	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300006172\|Ga0075018_10416116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	686	Open in IMG/M
3300006358\|Ga0068871_100670756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	948	Open in IMG/M
3300006844\|Ga0075428_100165873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2396	Open in IMG/M
3300006844\|Ga0075428_101108842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	836	Open in IMG/M
3300006845\|Ga0075421_100397917	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300006847\|Ga0075431_100495246	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300006854\|Ga0075425_100082036	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3647	Open in IMG/M
3300006871\|Ga0075434_101965225	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300006904\|Ga0075424_100836344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	982	Open in IMG/M
3300006904\|Ga0075424_101880762	Not Available	632	Open in IMG/M
3300009012\|Ga0066710_100821361	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300009038\|Ga0099829_10049517	All Organisms → cellular organisms → Bacteria	3106	Open in IMG/M
3300009038\|Ga0099829_10390215	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300009089\|Ga0099828_11333633	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300009090\|Ga0099827_10509202	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300009094\|Ga0111539_10244428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2089	Open in IMG/M
3300009094\|Ga0111539_11289350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	848	Open in IMG/M
3300009147\|Ga0114129_13014907	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009156\|Ga0111538_10021065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	8517	Open in IMG/M
3300009156\|Ga0111538_10218199	All Organisms → cellular organisms → Bacteria	2417	Open in IMG/M
3300009156\|Ga0111538_10873928	Not Available	1138	Open in IMG/M
3300009162\|Ga0075423_11026173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	877	Open in IMG/M
3300009816\|Ga0105076_1119680	Not Available	523	Open in IMG/M
3300009821\|Ga0105064_1022839	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1156	Open in IMG/M
3300009822\|Ga0105066_1095099	Not Available	655	Open in IMG/M
3300010038\|Ga0126315_10967728	Not Available	569	Open in IMG/M
3300010043\|Ga0126380_10198006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1342	Open in IMG/M
3300010359\|Ga0126376_11856039	Not Available	642	Open in IMG/M
3300010360\|Ga0126372_12254169	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300010362\|Ga0126377_10406449	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300010366\|Ga0126379_11649668	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300010391\|Ga0136847_10560732	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1416	Open in IMG/M
3300010398\|Ga0126383_10505504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1268	Open in IMG/M
3300011270\|Ga0137391_10515516	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300012096\|Ga0137389_10100086	All Organisms → cellular organisms → Bacteria	2302	Open in IMG/M
3300012189\|Ga0137388_10378448	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300012204\|Ga0137374_10491022	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300012206\|Ga0137380_10051911	All Organisms → cellular organisms → Bacteria	3760	Open in IMG/M
3300012207\|Ga0137381_10063119	All Organisms → cellular organisms → Bacteria	3084	Open in IMG/M
3300012351\|Ga0137386_10284961	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300012359\|Ga0137385_10359375	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300012363\|Ga0137390_10501333	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300012469\|Ga0150984_116644409	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	680	Open in IMG/M
3300012930\|Ga0137407_10428210	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300012971\|Ga0126369_11984448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	670	Open in IMG/M
3300013308\|Ga0157375_11874045	Not Available	712	Open in IMG/M
3300014150\|Ga0134081_10386640	Not Available	522	Open in IMG/M
3300014326\|Ga0157380_10161011	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1951	Open in IMG/M
3300015259\|Ga0180085_1205084	Not Available	588	Open in IMG/M
3300015264\|Ga0137403_11170531	Not Available	615	Open in IMG/M
3300015373\|Ga0132257_102567191	Not Available	662	Open in IMG/M
3300017656\|Ga0134112_10303296	Not Available	642	Open in IMG/M
3300017792\|Ga0163161_10836337	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	776	Open in IMG/M
3300018031\|Ga0184634_10077651	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300018031\|Ga0184634_10479551	Not Available	558	Open in IMG/M
3300018063\|Ga0184637_10168400	Not Available	1349	Open in IMG/M
3300018063\|Ga0184637_10742807	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	530	Open in IMG/M
3300018078\|Ga0184612_10114707	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1410	Open in IMG/M
3300018082\|Ga0184639_10052974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2100	Open in IMG/M
3300018082\|Ga0184639_10644221	Not Available	514	Open in IMG/M
3300018433\|Ga0066667_10252289	All Organisms → cellular organisms → Bacteria → PVC group	1338	Open in IMG/M
3300018482\|Ga0066669_10127931	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1824	Open in IMG/M
3300019360\|Ga0187894_10000460	All Organisms → cellular organisms → Bacteria	55042	Open in IMG/M
3300019360\|Ga0187894_10010730	All Organisms → cellular organisms → Bacteria	7808	Open in IMG/M
3300019360\|Ga0187894_10189613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1012	Open in IMG/M
3300019360\|Ga0187894_10468588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	550	Open in IMG/M
3300019458\|Ga0187892_10004886	All Organisms → cellular organisms → Bacteria	21871	Open in IMG/M
3300019487\|Ga0187893_10009944	All Organisms → cellular organisms → Bacteria	14409	Open in IMG/M
3300019487\|Ga0187893_10026462	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6836	Open in IMG/M
3300019487\|Ga0187893_10182558	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300020084\|Ga0194110_10769847	Not Available	587	Open in IMG/M
3300022563\|Ga0212128_10938616	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	509	Open in IMG/M
3300025901\|Ga0207688_10793832	Not Available	600	Open in IMG/M
3300025918\|Ga0207662_10447618	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	883	Open in IMG/M
3300025923\|Ga0207681_11603147	Not Available	545	Open in IMG/M
3300026023\|Ga0207677_11141447	Not Available	712	Open in IMG/M
3300026035\|Ga0207703_10186853	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300026116\|Ga0207674_10489846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1188	Open in IMG/M
3300027835\|Ga0209515_10014072	All Organisms → cellular organisms → Bacteria	8322	Open in IMG/M
3300027846\|Ga0209180_10322827	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300027875\|Ga0209283_10945634	Not Available	518	Open in IMG/M
3300027894\|Ga0209068_10866609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300027909\|Ga0209382_10290925	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300027909\|Ga0209382_10297489	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300027909\|Ga0209382_11627574	Not Available	637	Open in IMG/M
3300027910\|Ga0209583_10089291	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300027952\|Ga0209889_1110745	Not Available	545	Open in IMG/M
3300027961\|Ga0209853_1041115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1315	Open in IMG/M
3300028380\|Ga0268265_11285030	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	731	Open in IMG/M
3300030619\|Ga0268386_10234555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	1358	Open in IMG/M
3300031058\|Ga0308189_10020077	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1558	Open in IMG/M
3300031092\|Ga0308204_10070107	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300031740\|Ga0307468_101829163	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300031908\|Ga0310900_10318285	Not Available	1151	Open in IMG/M
3300031966\|Ga0308420_1000646	All Organisms → cellular organisms → Bacteria	17597	Open in IMG/M
3300033004\|Ga0335084_12455112	Not Available	501	Open in IMG/M
3300034090\|Ga0326723_0048861	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300034644\|Ga0370548_106980	Not Available	573	Open in IMG/M
3300034680\|Ga0370541_005488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.29%
Host-Associated	Host-Associated	30.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.54%
Plants	Host-Associated → Plants	30.71%
Aquatic	Environmental → Aquatic	15.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.90%
Sediment	Environmental → Aquatic → Sediment	11.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.02%
Cave	Environmental → Terrestrial → Cave	6.30%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.36%
Peat	Environmental → Terrestrial → Peat	0.79%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.24%
Loam	Environmental → Terrestrial → Soil → Loam	8.66%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	6.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.15%
Sand	Environmental → Terrestrial → Soil → Sand	3.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.36%
Lake	Environmental → Aquatic → Freshwater → Lake	1.57%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.24%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	6.30%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.15%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.94%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.51%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.15%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.57%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.57%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.79%
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	0.79%
Hot Spring Sediments	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments	0.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.79%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003890	Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031966	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1058339223	3300000364	Soil	VAKTTAHSPAARLSRLFRKAGVFLAKGQWHEALAVFREGEALAQALGDEEKLTLFREEIARCQERLTG*
JGI1027J12803_1010482362	3300000955	Soil	VAKTTAHSPAARLSRLFRKAGVFLAKGQWHEALAVFREGEALAQALGDEEKLTLFREEIARCQER
Ga0063162_11108713	3300003890	Hot Spring Sediments	MAESSTKNPAQRFSRLFRKGGVFLGKGQLPEALAAFREGEALAVSLGDEQRLTLFREEIARCLEQLSRKPH*
Ga0063356_1017646752	3300004463	Arabidopsis Thaliana Rhizosphere	KRGHLVAESARTAAAQLSRVFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITQCEQKLRVRVR*
Ga0066683_101485142	3300005172	Soil	MAEPAPKSPAQRFSRLFRKAGAFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0066676_103628312	3300005186	Soil	MAEPAPKSPAQRFSRLFRKAGVFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0070690_1008261451	3300005330	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEI
Ga0066388_1008597992	3300005332	Tropical Forest Soil	VAEVTDKSPAARFSRLFRKAGVFLAKGQWHQALAVLREGEALARALGDGEKLALFREEIARCEERLSQ*
Ga0066388_1008884443	3300005332	Tropical Forest Soil	VAETTSKSPAARFSRLFRKAGVFLAKSQWQEALTVFREGETLAQTLGDEEKLALFREEIARCQERLSH*
Ga0066388_1052036672	3300005332	Tropical Forest Soil	VANSSPQTPAARFSRLFRKAGVFLAKGQHREALAVFREGEALALSLGDEQRLALFREEIARCLQELS*
Ga0068868_1006873072	3300005338	Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITRCEQQGKRE*
Ga0070692_103851621	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQCEQKLKVRVR*
Ga0070669_1003225712	3300005353	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQCEQKLGIRIR*
Ga0070671_1010343431	3300005355	Switchgrass Rhizosphere	VAESTHTPAAQLSRVFRKAGICLARGQIELALAVFREGEALALSLGDEEKLALFREEIMRCEERLGKR*
Ga0070700_1000961411	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQCEQKLRVRVR*
Ga0070708_1021984451	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AQRFSRLFRKAGTFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0070707_1012780761	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VTEVAGKSPAARFSRLFRKAGVFLAKGQWPEALAVFREGEALAQTLGDEEKLALFREEIARCQERLSQ*
Ga0070741_100082875	3300005529	Surface Soil	VAESSSHTPAAQLSRVFRKAGVFLAKGQIEQALAALREGEALAITLGDGEKLALFREEIAQCEERLKEG*
Ga0070702_1013012392	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQYEQKLRVRVR*
Ga0068859_1001546241	3300005617	Switchgrass Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGEALAQALGDEEKLALFREEVTQCEQQLKRE*
Ga0066905_1003706402	3300005713	Tropical Forest Soil	VAERTAHSPAARFSRLFRKAGVFLAKGQWQEALTVFREGEALALALGDGEKLALFREEIARCQERLTE*
Ga0068866_107214671	3300005718	Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGETLAQVLGDEEKLALFREEI
Ga0074470_106428602	3300005836	Sediment (Intertidal)	MAESAPKSASERFSRLFRKAGVFLGKGHWAEALAVFREGEALALALDDSVRLTLFREEIVRCVASMPEKTER*
Ga0068858_1024230761	3300005842	Switchgrass Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGEALAQALGDGERLALFREEVTQCEQQLKRE*
Ga0081455_100959452	3300005937	Tabebuia Heterophylla Rhizosphere	VNESLPESPAKRFSRLFRKAGVFLAKEQFDQALMVFREGEALAVALDDKEKLALFREEIIQCEKHLRE*
Ga0081539_1000413311	3300005985	Tabebuia Heterophylla Rhizosphere	VTEPSSRSPSAQMSRLFRKAGVFLAKGQYEQALATFREGEALALSLDDTEKLALFRQEITRCDKHLSNRLT*
Ga0075023_1000619652	3300006041	Watersheds	VAESAHSPAARLSRIFRKAGVFLAKGQLEQALTAFREGEALAVTLGDEEKLALFREEITQCEEQLKEG*
Ga0075028_1000474504	3300006050	Watersheds	VAESPPRTPAAQLSRVFRKAGVFLAKGQISQALAVFREGEALALSLGDTEKLALFREEITRCEEHLQNSSA*
Ga0075018_104161161	3300006172	Watersheds	VHPVAESPPRTPAAQLSRVFRKAGVFLAKGQISQALAVFREGEALALALGDTEKLALFREEITRCEEHLQNSSA*
Ga0068871_1006707561	3300006358	Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITQYEQKLRVRVR*
Ga0075428_1001658733	3300006844	Populus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQIEQALAAFREGETLAQALGDEEKLALFREEITQCEQKLGIRIR*
Ga0075428_1011088421	3300006844	Populus Rhizosphere	VAESAHTPAAQFSRVFRKAGILLYRGQVELALAVFREGEALALSLGDEEKLALFREEITRCEERLRER*
Ga0075421_1003979172	3300006845	Populus Rhizosphere	VESLVESPAKRFSRLFRKAGVFLAKAQFNQALVALREGEALALALGDAEKLALFREEIVHCEQRRGEGH*
Ga0075431_1004952461	3300006847	Populus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQIEQALAAFREGETLAQALGDEEKLALFREEI
Ga0075425_1000820363	3300006854	Populus Rhizosphere	VTEVAGKSPAARFSRLFRKAGVFLAKGQWPEALAVLREGEALAQTLGDEEKLALFREEIARCQERLSQ*
Ga0075434_1019652251	3300006871	Populus Rhizosphere	QMSRVFRKAGVRLAKGQFEQALAAFREGEALALSFGDKEKLALFREEITRCEEQLQVHEQNGESGK*
Ga0075424_1008363441	3300006904	Populus Rhizosphere	VTEVAGKSPAARFSRLFRKAGVFLAKGQWPEALAVFREGEALAQTLGDEEKLALFREE
Ga0075424_1018807621	3300006904	Populus Rhizosphere	VAESTPRTPAAQMSRVFRKAGVRLAKGQFEQALAAFREGEALALSFGDKEKLALFREEITRCEEQLQVHEQNGESGK*
Ga0066710_1008213611	3300009012	Grasslands Soil	VTEMTSKSPAARFSRLFRKAGVFLAKNQWPEALAVFREGEALARALGDGEKLALFREEIARCEEQL
Ga0099829_100495173	3300009038	Vadose Zone Soil	VAEPTGKSPAARFSRLFRKAGAFLAKSQWQEALAVFREGEALAQALGDEEKLALFREEIARCRERLSE*
Ga0099829_103902153	3300009038	Vadose Zone Soil	VAEPTGKSPAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFREEIARCRERLSE*
Ga0099828_113336331	3300009089	Vadose Zone Soil	RFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFREEIARCRERLSE*
Ga0099827_105092022	3300009090	Vadose Zone Soil	VAEPAGKSPAARFSRLFRKAGVFLAKSQWQEALAVFREGEALAQALGDEEKLALFREEIARCRERLSE*
Ga0111539_102444283	3300009094	Populus Rhizosphere	VAESAHSPAAQFSRVFRKAGILLYRGQVELALAVFREGEALALSLGDEEKLALFREEITRCEERLRER*
Ga0111539_112893502	3300009094	Populus Rhizosphere	VAESARTAAAQLSRVFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITRCEQQGEKRVVVRV*
Ga0114129_130149072	3300009147	Populus Rhizosphere	GWPKRSRVAETTGKSPAAHFSRLFRKAGVFLAKSQWQQALAVFREGETLAQTLGDEEKLALFREEIARCQERLSQ*
Ga0111538_100210657	3300009156	Populus Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGGALAQALGDEEKLALFREEVTQCEQQLKRE*
Ga0111538_102181993	3300009156	Populus Rhizosphere	VAESAHTPAAQFSRVFRKAGILLYRGQVELALAVFREGEALALSLGDEEKLALFREEITRCEQKLKEG*
Ga0111538_108739282	3300009156	Populus Rhizosphere	VAESARAPAAQLSRIFRKAGIFLAKGQLDQALAAFREGETLAQALGDEEKLALFREEITQCEQKLRGG*
Ga0075423_110261731	3300009162	Populus Rhizosphere	VAESARTAAAQLSRVFRKGGFFLAKGQLERALAAFREGEALAQALGDEEKLALFREEITRCEQQGEKRVVARV*
Ga0105076_11196801	3300009816	Groundwater Sand	VAESLVKSPAERFSRLFRKAGVFLGKEQLREALGVLRKGEALALALGDTQRLTLFREEIARCLAQLSERPE*
Ga0105064_10228393	3300009821	Groundwater Sand	VAESPVKSPAERFRRLFRKAGVFLGKEQLREALGVLRKGEALALALGDTQRLTLFREESARCLAQLSERPD*
Ga0105066_10950992	3300009822	Groundwater Sand	VAESLVKSPAERFSRLFRKAGVFLGKEQLREALGVLREGEALALALGDTQRLTLFREEIARCLAQLSERPE*
Ga0126315_109677281	3300010038	Serpentine Soil	VAKTTAHSPAARLSRLFRKAGVFLAKSQWHEALAVFREGEALAQALGDEEKLTLFREEIARCQERLTE*
Ga0126380_101980063	3300010043	Tropical Forest Soil	VAERTAHSPAARFSRLFRKAGVFLAKGQWQEALTVFREGEALAQALGDGEKLALFREEIA
Ga0126376_118560391	3300010359	Tropical Forest Soil	VAETTGKSPAARFSRLFRKAGVFLAKSQWQQALAVFREGEALAQTLGDEEKLALFREEIARCQERLSH*
Ga0126372_122541692	3300010360	Tropical Forest Soil	NSSPQTPAVRFSRLFRKAGVFLAKGQHREALAVFREGEALALSLGDEQRLALFREEIARCLQELS*
Ga0126377_104064493	3300010362	Tropical Forest Soil	VAETTSKSPAARFSRLFRKAGVFLAKSQWQQALAVFCEGEALAQTLGDEEKLALFR
Ga0126379_116496682	3300010366	Tropical Forest Soil	VANSSPQTPAARFTRLFRKAGVFLAKGQHREALAVFREGEALALSLGDEQRLALFREEIARCVQELT*
Ga0136847_105607323	3300010391	Freshwater Sediment	VAEPIPKSPAARFSRLFRKGGVFLAKSQWQEALAVFREGEALALSVGDEEKLALFRAEIARCQERLGG*
Ga0126383_105055041	3300010398	Tropical Forest Soil	VAEVTDKSPAARFSRLFRKAGVFLAKGQWHQALAVLREGEALARALGDGGKLALFREEIARCEERLSQ*
Ga0137391_105155162	3300011270	Vadose Zone Soil	VAEPAGKSPAARFSRLFRKAGVFLAKSQWQEALVVFRDGETLAQTLGDEEKLALFRTEIARCRERLSE*
Ga0137389_101000862	3300012096	Vadose Zone Soil	VAEPTGKSRAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFRAEIARCRERLSE*
Ga0137388_103784483	3300012189	Vadose Zone Soil	VAEPTGKSPAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFRAEIARCRERLSE*
Ga0137374_104910222	3300012204	Vadose Zone Soil	MAEPTGKSPAARFSRLFRKAGVYLAKSQWQQALAVFREGETLAQTLGDEEKLALFRAEIARCQERLSQ*
Ga0137380_100519113	3300012206	Vadose Zone Soil	MAEPASKSPAQRFSRLFRKAGVFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0137381_100631192	3300012207	Vadose Zone Soil	MAEPAPKSPAQRFSRLFRKAGTFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0137386_102849611	3300012351	Vadose Zone Soil	MAEPAPKSPAQRFSRLFRKAGVFLAKGQVSEALAVLREGEALARTMGDEEKLALFREEIAQCQQR
Ga0137385_103593752	3300012359	Vadose Zone Soil	MAEPAPKSPAQRFSRLFRKAGVFLAKGQVSEALAVLCEGEALARTLGDEEKLALFREEIAQCQQRLRE*
Ga0137390_105013332	3300012363	Vadose Zone Soil	VAEPAGKSPAARFSRLFRKAGVFLAKSQWQEALVVFREGEALAQALGDEEKLALFREEIARCRERLSE*
Ga0150984_1166444091	3300012469	Avena Fatua Rhizosphere	VAESPPRTPAAQLSRIFRKAGVFLAKGQLGQALATFREGETLAQALGDEEKLALFREEITRCEEQLKDG*
Ga0137407_104282102	3300012930	Vadose Zone Soil	VAETTGKSPAARFSRLFRKAGVFLAKSHWQQALAVFREGETLAQTLGDEEKLALFRAEIARCQERLSQ*
Ga0126369_119844482	3300012971	Tropical Forest Soil	EVTDKSPAARFSRLFRKAGVFLAKGQWHQALAVLREGEALARTLGDGEKLALFREEIACCEERLSQ*
Ga0157375_118740452	3300013308	Miscanthus Rhizosphere	VAESARTAAAQLSRVFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEVTQCEQQLKRE*
Ga0134081_103866402	3300014150	Grasslands Soil	MAEPAPKSPAQRFSRLFRKAGAFLAKGQVSEALAVLREGEALAQTLGDEEKLALFREEIAQCQQRLRE*
Ga0157380_101610114	3300014326	Switchgrass Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITRCEQQGKRE*
Ga0180085_12050842	3300015259	Soil	VAEPPPKSPAARFSRLFRKGGVFLAKSQWQEALAVFREGEALALSVGDEEKLALFREEIARCRERLDG*
Ga0137403_111705312	3300015264	Vadose Zone Soil	VAETTGKSPAARFSRLFRKAGVFLAKSQWQQALAVFREGETLAQTLGDEEKLALFREEIARCQERLSQ*
Ga0132257_1025671911	3300015373	Arabidopsis Rhizosphere	PAAQLSRIFRKAGIFLAKGQLDQALAAFREGETLAQALGDEEKLALFREEITRCEQQGKRE*
Ga0134112_103032962	3300017656	Grasslands Soil	MAEPAPKSPTQRFSRLFRKAGAFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE
Ga0163161_108363371	3300017792	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQIEQALAAFREGETLAQALGDEEKLALFREEITRCEQQGKRE
Ga0184634_100776512	3300018031	Groundwater Sediment	VAESLLESPAKRFSRLFRKAGVFLAKAQFDQALVTLREGEAFALAVGDKEKLAFFREEIVCCEQRRGEEH
Ga0184634_104795511	3300018031	Groundwater Sediment	VAEPPPKSPAARFSRLFRKGGVFLAKSQWQEALAVFREGEALALSVGDEEKLALFRAEIARCQERLGG
Ga0184637_101684001	3300018063	Groundwater Sediment	VAEPIPKSPAARFSRLFRKGGVFLAKSQWQEALAVFREGEALALSVGDEEKLALFRAEIARCQERLGG
Ga0184637_107428072	3300018063	Groundwater Sediment	VAESLPESPAKRFSRLFRKAGVFLAKAQFDQALVTLREGEALALALGDKEKLALFREEIVQCEQRRGEEHSIEEA
Ga0184612_101147071	3300018078	Groundwater Sediment	VAEPPPKSPAARFSRLFRKGGVFLAKSQWQEALAVFREGEALALSVGDEEKLALFREEIARCRERLDG
Ga0184639_100529742	3300018082	Groundwater Sediment	VTEPAAKTPAERFSRLFRKAGVFLAKGQLNEALAVCREGEALARILGDEARLALFRAEIAQCERRLSG
Ga0184639_106442212	3300018082	Groundwater Sediment	VAESPVKSPAERFSRLFRKAGVFLGKEQLREALGVLREGEALALALGDTQRLTLFREEIARCLAQLSERPD
Ga0066667_102522892	3300018433	Grasslands Soil	MAEPAPKSPAQRFSRLFRKAGVFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE
Ga0066669_101279313	3300018482	Grasslands Soil	MAEPAPKSPAQRFSRLFRKAGAFLAKGQVSEALAVLREGEALARTLGDEEKLALFREEIAQCQQRLRE
Ga0187894_1000046011	3300019360	Microbial Mat On Rocks	VAESTPKSPAERFSRLFRKAGVFLAKGQFDQALTVLREGEALAQSLGDEEKLALFYEEIAKCEEKLKTG
Ga0187894_100107306	3300019360	Microbial Mat On Rocks	VAEPTPQSPAARFSRLFRKAGVFLAKSQWQDALAVFREGEALALRMGDEEKLALFREEIARCQERLDG
Ga0187894_101896131	3300019360	Microbial Mat On Rocks	VAKTSPTSPAQRLSRLFRKAGVFLAKGQWHEALAVFRKGEALAQGLGDEEKAALFREEIAHCRERLG
Ga0187894_104685881	3300019360	Microbial Mat On Rocks	AKRFSRLFRKAGVFIAKAQFDQALVVFREGEALAAALDDKKKLALFRDEIIQCEKRLGEQ
Ga0187892_1000488617	3300019458	Bio-Ooze	VAESLPESSAKRFSRLFRKAGVFIAKAQFDQALVVFREGEALAAALDDKKKLALFRDEIIQCEKRLGEQP
Ga0187893_100099443	3300019487	Microbial Mat On Rocks	VAEASTKSPAERFSRLFRKAGVFLAKGQWQEALTAFREGESLAQSLGDEEKLALFREEIARCQQRLSNPASQLGK
Ga0187893_100264627	3300019487	Microbial Mat On Rocks	MTKPTVKSSAMHFSRLFRKAGVFLAKGQLQEALVVLREGEALARSLGDEEKLVLFLEEITRCQQQRGE
Ga0187893_101825582	3300019487	Microbial Mat On Rocks	MPGAGGCPAKTRMAEPTPQSPAARLSRLFRKAGVFLAKGQLQDALRVLREGEALARSLGDEEKLTLFREEIARCQQQQSA
Ga0194110_107698472	3300020084	Freshwater Lake	VAESPARTPAAQLSRIFRKAGVLLAKGQIEQTLTVLREGETLARSLGGEEKLALFREEILRCEERLAGGLS
Ga0212128_109386162	3300022563	Thermal Springs	VAEATSQKSPSKCFSRLFRKAGVFLAKGQWQEALVVFREGEALAQGLGDEEKLALFREEIARCQERMSKN
Ga0207688_107938321	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITRCEQQGKRE
Ga0207662_104476181	3300025918	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQYEQKLRVRVR
Ga0207681_116031471	3300025923	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEVAKGMSQAAEQMK
Ga0207677_111414472	3300026023	Miscanthus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQALGDEEKLALFREEITRCEQQGKRE
Ga0207703_101868533	3300026035	Switchgrass Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQLEQALAAFREGEALAQTLGDEEKLALFREEITQCEQKLRVRVR
Ga0207674_104898461	3300026116	Corn Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGEALAQALGDEEKLALFREEVT
Ga0209515_100140727	3300027835	Groundwater	MAEPTGKSPAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFRAEIARCRERLSK
Ga0209180_103228272	3300027846	Vadose Zone Soil	VAEPTGKSPAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFREEIARCRERLSE
Ga0209283_109456341	3300027875	Vadose Zone Soil	VAEPTGKSPAERFSRLFRKAGVFLAKSQWQEALAVFRAGEALAQALGDEEKLALFRE
Ga0209068_108666092	3300027894	Watersheds	VAESPPRTPAAQLSRVFRKAGVFLAKGQISQALAVFREGEALALALGDTEKLALFREEITRCEEHLQNSSA
Ga0209382_102909253	3300027909	Populus Rhizosphere	VAESARTPAAQLSRIFRKAGIFLAKGQIEQALAAFREGETLAQALGDEEKLALFREEITQCEQKLGIRIR
Ga0209382_102974892	3300027909	Populus Rhizosphere	VGSLAESPAKRFSRLFRKAGVFLAKAQFNQALVTLREGEALALALGDAEKLALFREEIVHCEQRQGEGH
Ga0209382_116275742	3300027909	Populus Rhizosphere	VESLVESPAKRFSRLFRKAGVFLAKAQFNQALVTLREGEALALALGDAEKLALFREEIVHCEQRRGEGH
Ga0209583_100892912	3300027910	Watersheds	VAESAHSPAARLSRIFRKAGVFLAKGQLEQALTAFREGEALAVTLGDEEKLALFREEITQCEEQLKEG
Ga0209889_11107452	3300027952	Groundwater Sand	VAESLVKSPAERFSRLFRKAGVFLGKEQLREALGVLRKGEALALALGDTQRLTLFREEIARCLAQLSERPE
Ga0209853_10411152	3300027961	Groundwater Sand	VAESLVKSPAERFSRLFRKAGVFLGKEQLREALGVLREGEALALALGDTQRLTLFREEIARCLAQLSERPE
Ga0268265_112850302	3300028380	Switchgrass Rhizosphere	MAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGEALAQALGDEEKLALFREEVTQCEQQLKRE
Ga0268386_102345552	3300030619	Soil	VAEFTAKSVAERFSRLFRKAGVFLSKGQLQEALTTFREGEALALTLRDEGKLALFREEIVQCEKRLQE
Ga0308189_100200772	3300031058	Soil	VAESLLESPAKRFSRLFRKAGVFLAKGQFDQALVTLREGEALALAWDDKEKLALFREEIVHCEQCRGEEH
Ga0308204_100701072	3300031092	Soil	VAESLLESPAKRFSRLFRKAGVFLAKGQFDQALVTLREGEALALAWDDQEKLALFREEIVHFEQYRGEEH
Ga0307468_1018291632	3300031740	Hardwood Forest Soil	VAESLSESPAKRCSRLFRKAGVFLAKAQFEQALVTLREGEAFALAWGDTEKLALFREEILRCEQRRREDRSIEES
Ga0310900_103182853	3300031908	Soil	LMAESARTPAAQLSRVFRKAGIFLAKGQLDQALAAFREGEALAQALGDEEKLALFREEVTQCEQQLKRE
Ga0308420_10006463	3300031966	Hot Spring Phototrophic Mat	VTPMMRNSAAARFRRLFRKAGILLAQGRQREALTVLREGETLARALGDEEKAALFREEITRCEKSPCEQ
Ga0335084_124551122	3300033004	Soil	VAEAPPKTPAERFSRLFRKAGVLLGKGQLTEALAVFREGEALAVSLGDEQRAALFREEITRCLVQLNSRQ
Ga0326723_0048861_1379_1585	3300034090	Peat Soil	VAEPTGKSPAARFSRLFRKAGAFLAKSQWQEALAVFREGETLAQTLGDEEKLALFREEIARCRERPSE
Ga0370548_106980_3_203	3300034644	Soil	LLESPAKRFSRLFRKAGVFLAKAQFDQALVTLREGEALALAWGDQEKLALFREEIVHCEQHRGEEH
Ga0370541_005488_675_878	3300034680	Soil	MANSLPQTSAVRFSRLFRKAGVFLAKGQHSAALAVFREGEALARSLGDEQRLALFREEIARCLQELS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066105

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences