Metagenome / Metatranscriptome Family F059252

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F059252
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	44 residues
Representative Sequence	FRRVSFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Number of Associated Samples	116
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.75 %
% of genes near scaffold ends (potentially truncated)	97.76 %
% of genes from short scaffolds (< 2000 bps)	95.52 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (91.045 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.164 % of family members)
Environment Ontology (ENVO)	Unclassified (32.090 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.478 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.94% β-sheet: 0.00% Coil/Unstructured: 56.06%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF03824	NicO	66.42
PF13490	zf-HC2	8.21
PF00579	tRNA-synt_1b	1.49
PF13795	HupE_UreJ_2	1.49
PF07676	PD40	1.49
PF04542	Sigma70_r2	1.49
PF01479	S4	0.75
PF00296	Bac_luciferase	0.75
PF10099	RskA	0.75
PF04545	Sigma70_r4	0.75
PF08281	Sigma70_r4_2	0.75
PF02645	DegV	0.75
PF00180	Iso_dh	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.49
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.49
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.49
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.49
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.49
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.49
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.04 %
Unclassified	root	N/A	8.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.04 %
Unclassified	root	N/A	8.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.04 %
Unclassified	root	N/A	8.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.42 %
Unclassified	root	N/A	8.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.49 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.75 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.75 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.18 %
Unclassified	root	N/A	8.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.49 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.01 %
Unclassified	root	N/A	8.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.49 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	46.27 %
Unclassified	root	N/A	8.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.49 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.75 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.27 %
Unclassified	root	N/A	8.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.49 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.27 %
Unclassified	root	N/A	8.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.49 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459014\|G1P06HT01A6U8E	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
2228664021\|ICCgaii200_c1031650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	945	Open in IMG/M
3300004157\|Ga0062590_102823937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300004480\|Ga0062592_100209954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1383	Open in IMG/M
3300005335\|Ga0070666_10919483	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005338\|Ga0068868_100125606	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300005355\|Ga0070671_100306699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1352	Open in IMG/M
3300005356\|Ga0070674_100127195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1895	Open in IMG/M
3300005439\|Ga0070711_100820432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	790	Open in IMG/M
3300005445\|Ga0070708_101845403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300005455\|Ga0070663_101248736	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300005467\|Ga0070706_100414891	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005471\|Ga0070698_100105172	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
3300005540\|Ga0066697_10653218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300005553\|Ga0066695_10637619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300005559\|Ga0066700_10491787	Not Available	857	Open in IMG/M
3300005560\|Ga0066670_10758346	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005564\|Ga0070664_101762078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300005569\|Ga0066705_10204683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1237	Open in IMG/M
3300005575\|Ga0066702_10421680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300005614\|Ga0068856_102319424	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
3300005764\|Ga0066903_104132354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300005764\|Ga0066903_105714903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300005842\|Ga0068858_100542884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1125	Open in IMG/M
3300005844\|Ga0068862_102231293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300006032\|Ga0066696_10451175	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300006046\|Ga0066652_100247934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1558	Open in IMG/M
3300006173\|Ga0070716_101363032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300006175\|Ga0070712_100393274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300006175\|Ga0070712_101159849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300006358\|Ga0068871_100957691	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300006573\|Ga0074055_11719597	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006581\|Ga0074048_11799777	Not Available	862	Open in IMG/M
3300006797\|Ga0066659_10682803	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300006804\|Ga0079221_11664298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300006804\|Ga0079221_11718709	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300006806\|Ga0079220_10180492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1198	Open in IMG/M
3300006847\|Ga0075431_101832821	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300006871\|Ga0075434_100015904	All Organisms → cellular organisms → Bacteria	7226	Open in IMG/M
3300006954\|Ga0079219_12318473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300009177\|Ga0105248_13063169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300009792\|Ga0126374_11642071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300010044\|Ga0126310_11032533	Not Available	649	Open in IMG/M
3300010301\|Ga0134070_10059291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1296	Open in IMG/M
3300010304\|Ga0134088_10369907	Not Available	697	Open in IMG/M
3300010320\|Ga0134109_10457524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300010322\|Ga0134084_10320327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300010337\|Ga0134062_10634592	Not Available	554	Open in IMG/M
3300010366\|Ga0126379_13256153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300010371\|Ga0134125_12100865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300010396\|Ga0134126_10091627	Not Available	3747	Open in IMG/M
3300010396\|Ga0134126_10906101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300010400\|Ga0134122_11396015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300011107\|Ga0151490_1764355	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	706	Open in IMG/M
3300011994\|Ga0120157_1033153	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300012189\|Ga0137388_10976513	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012189\|Ga0137388_11017852	All Organisms → cellular organisms → Bacteria → Terrabacteria group	764	Open in IMG/M
3300012199\|Ga0137383_10598398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	807	Open in IMG/M
3300012206\|Ga0137380_10354249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1309	Open in IMG/M
3300012206\|Ga0137380_10858844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300012206\|Ga0137380_11056992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	693	Open in IMG/M
3300012211\|Ga0137377_11697157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300012353\|Ga0137367_11128304	Not Available	528	Open in IMG/M
3300012354\|Ga0137366_11171658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300012356\|Ga0137371_10899417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300012359\|Ga0137385_11062025	Not Available	667	Open in IMG/M
3300012488\|Ga0157343_1013400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300012907\|Ga0157283_10165359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300012929\|Ga0137404_11557187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	612	Open in IMG/M
3300012972\|Ga0134077_10491914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300012972\|Ga0134077_10512975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300012984\|Ga0164309_10477007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300013307\|Ga0157372_11192419	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300013307\|Ga0157372_12202165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300015167\|Ga0167661_1090863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	544	Open in IMG/M
3300017654\|Ga0134069_1221905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300017792\|Ga0163161_10896625	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300018433\|Ga0066667_10148635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1649	Open in IMG/M
3300018468\|Ga0066662_12739013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300019882\|Ga0193713_1165456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300021080\|Ga0210382_10452514	All Organisms → cellular organisms → Bacteria → Terrabacteria group	569	Open in IMG/M
3300024254\|Ga0247661_1103238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300025885\|Ga0207653_10410956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300025907\|Ga0207645_10461559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	858	Open in IMG/M
3300025911\|Ga0207654_10262425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1162	Open in IMG/M
3300025917\|Ga0207660_10327611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300025922\|Ga0207646_10754188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	868	Open in IMG/M
3300025931\|Ga0207644_11269303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300025936\|Ga0207670_11637571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300025939\|Ga0207665_11127344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	625	Open in IMG/M
3300025939\|Ga0207665_11230322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300025961\|Ga0207712_10201068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1580	Open in IMG/M
3300025981\|Ga0207640_10809427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300026023\|Ga0207677_10763716	Not Available	863	Open in IMG/M
3300026035\|Ga0207703_10898370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300026318\|Ga0209471_1064678	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300026538\|Ga0209056_10506067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300026542\|Ga0209805_1322832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300026550\|Ga0209474_10343680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300026550\|Ga0209474_10425413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682	Open in IMG/M
3300027775\|Ga0209177_10427493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300027821\|Ga0209811_10125256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300027821\|Ga0209811_10310765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300028379\|Ga0268266_10048727	All Organisms → cellular organisms → Bacteria	3632	Open in IMG/M
3300028380\|Ga0268265_12173623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300028587\|Ga0247828_10947141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300028704\|Ga0307321_1020145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1172	Open in IMG/M
3300028705\|Ga0307276_10035545	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300028705\|Ga0307276_10123447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300028707\|Ga0307291_1046851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300028707\|Ga0307291_1180335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300028711\|Ga0307293_10266686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300028711\|Ga0307293_10288065	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300028716\|Ga0307311_10176794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300028716\|Ga0307311_10231406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300028768\|Ga0307280_10021559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1858	Open in IMG/M
3300028787\|Ga0307323_10034431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1764	Open in IMG/M
3300028791\|Ga0307290_10297268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300028799\|Ga0307284_10358859	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300028824\|Ga0307310_10226156	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300028828\|Ga0307312_10772639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300028828\|Ga0307312_11109630	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300028875\|Ga0307289_10329363	Not Available	628	Open in IMG/M
3300028876\|Ga0307286_10045002	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300028878\|Ga0307278_10200195	Not Available	891	Open in IMG/M
3300028885\|Ga0307304_10201026	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031847\|Ga0310907_10150705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1067	Open in IMG/M
3300031943\|Ga0310885_10578960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300031995\|Ga0307409_100599785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1088	Open in IMG/M
3300031996\|Ga0308176_11908255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300032180\|Ga0307471_102219209	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300032180\|Ga0307471_104283660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300034817\|Ga0373948_0033741	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.36%
Host-Associated	Host-Associated	20.90%
Engineered	Engineered	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.61%
Plants	Host-Associated → Plants	20.90%
Aquatic	Environmental → Aquatic	0.75%
Solid Waste	Engineered → Solid Waste	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.46%
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Roots	Host-Associated → Plants → Roots	0.75%
Grass	Engineered → Solid Waste → Grass	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.42%
Loam	Environmental → Terrestrial → Soil → Loam	11.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.75%
Composting	Engineered → Solid Waste → Grass → Composting	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.49%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.75%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.49%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.49%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.49%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.49%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.75%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.75%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.75%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2PV_00266640	2170459014	Switchgrass, Maize And Mischanthus Litter	IAVLARKAFRRLSFEGSLIRLLPAVSALVILAAGVAMTLRALPKVA
ICCgaii200_10316504	2228664021	Soil	RASFEGRLLRLLPAASALVILAAGLAMTARALPKVH
Ga0062590_1028239371	3300004157	Soil	AVLARRVFKRMSFEGRLIRLLPAASALVILAAGLAMTAHAVPKVS*
Ga0062592_1002099541	3300004480	Soil	SAFRRGTFEGPLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0070666_109194831	3300005335	Switchgrass Rhizosphere	TGIGLAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0068868_1001256061	3300005338	Miscanthus Rhizosphere	GVGLLAVLARSTFRRLSFEGRLMRLLPAASALVILAAGVAMTLRAFPKVA*
Ga0070671_1003066991	3300005355	Switchgrass Rhizosphere	VGLAAVVARSAFRRASFEGRLVRLLPAASALVILAAGVAMTLRAVPKVS*
Ga0070674_1001271954	3300005356	Miscanthus Rhizosphere	IGLAAVLARTAFRRVSFDGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0070711_1008204321	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LVAVFAKQIFKRASFEGRLVRLLPAASALVILAAGLTMTVRALPKVA*
Ga0070708_1018454032	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LVAVYAKQIFKRASFEGRLIRLLPAASALVILAAGLAMTARALPKVH*
Ga0070663_1012487361	3300005455	Corn Rhizosphere	GIGLAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0070706_1004148911	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	TFFSRVSFEGPLMRALPTLSALVVIGLGVAMTLRAVPKVV*
Ga0070698_1001051724	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	AFARRSFDGLLIRALPAASALVILAAGVAMTAKALPKVH*
Ga0066697_106532182	3300005540	Soil	ARSAFRRFSFEGRLVRLLPTVSALVILVAGLLMTVHALPGVS*
Ga0066695_106376191	3300005553	Soil	TGIGLAAVLARSVFRRVNLDGRFIALLPAVSAFVILAAGVVMTIHALPRVA*
Ga0066700_104917871	3300005559	Soil	GFDGPLVRLLPAASALVILATGLAMTVRAVPKVS*
Ga0066670_107583462	3300005560	Soil	KQIFKRASFNGPLVRLLPAASALVILVAGLAMTVRALPKVS*
Ga0070664_1017620781	3300005564	Corn Rhizosphere	GIGLAAVLARSAFRRASFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0066705_102046833	3300005569	Soil	VAVFAKQIFKRASFEGRFVRLLPAASALVILAAGLAMTVRALPKVS*
Ga0066694_102312431	3300005574	Soil	GLAAVLAKRVFARASFDGRLLRALPALSALVILAAGVAMTARALPKVG*
Ga0066702_104216801	3300005575	Soil	VIARSAFKRLSFGGRLLSVLPAVSALVILAAGIAMTARALPGVS*
Ga0068856_1023194241	3300005614	Corn Rhizosphere	ALSITGVGLLAVLARSTFRRLSFEGRLMRLLPAASALVILAAGVAMTLRAFPKVA*
Ga0066903_1041323541	3300005764	Tropical Forest Soil	VSFEGSIIRLLPAASALVVLGLGVAMTVRALPHVI*
Ga0066903_1057149031	3300005764	Tropical Forest Soil	AVLAKRVFARVSFEGRLASLLPAASALVILVAGMAMTLRAIPRIGG*
Ga0068858_1005428841	3300005842	Switchgrass Rhizosphere	LSFEGRALSLLPAASALVILAAGLAMTIHSLPGVR*
Ga0068862_1022312932	3300005844	Switchgrass Rhizosphere	AAVLARGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS*
Ga0066696_104511751	3300006032	Soil	GIGLAAVVARSAFRRLSFEGRLLSLLPAVSALVIVAAGIAMTARALPRLS*
Ga0066652_1002479341	3300006046	Soil	SITGIGVVAVLARSAFRRVSFDGTLIRLLPAASALVILAAGLAMTFRALPKVA*
Ga0070716_1013630321	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ARSAFRRFSFEGRLVRLLPTGSALVILVAGLLMTVHALPGVS*
Ga0070712_1003932741	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AVFAKQIFKRASFEGRLVRLLPAASALVILAAGLMMTARALPKVH*
Ga0070712_1011598491	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ASFEGRLVRLLPAASALVILAAGLMMTARALPKVH*
Ga0068871_1009576911	3300006358	Miscanthus Rhizosphere	VVARSAFRRATFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0074055_117195971	3300006573	Soil	LVAVFAKQIFKRASFEGRLVRLLPAASALVILAAGLAMTVRALPKVS*
Ga0074048_117997771	3300006581	Soil	RRVSFEGPLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0066659_106828031	3300006797	Soil	IGLAAVLARGVFRRVGFDGRVVSLLPTASALVIVAAGLLMTFHALPRVG*
Ga0079221_116642982	3300006804	Agricultural Soil	ATFEGRLVRLLPAASALVILAAGPAMTLRAVPKVS*
Ga0079221_117187092	3300006804	Agricultural Soil	AGLALSITGIGLIAVLAKHVFRRASFDGRLIRLLTAASALVILAAGLAMTVRALPKVS*
Ga0079220_101804921	3300006806	Agricultural Soil	GIGLAAVLARSAFRRASFDGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0075431_1018328211	3300006847	Populus Rhizosphere	MSFEGRLVRLLPAASALVILAAGLAMTAHAVPKVS*
Ga0075434_10001590414	3300006871	Populus Rhizosphere	AKQVFKRASFEGRLVRLLPAASALVILVAGLAMTVRALPKVS*
Ga0079219_123184732	3300006954	Agricultural Soil	ATFRRVSFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0105248_130631691	3300009177	Switchgrass Rhizosphere	RASFEGRLVRLLPAASALVILAAGVAMTLRAVPKVS*
Ga0126374_116420712	3300009792	Tropical Forest Soil	RSFDGALVRALPVLSALVILAAGVAMAASALPKVR*
Ga0126310_110325332	3300010044	Serpentine Soil	GCAAVLARSAFRRVSFDGRLVRLLPAASALVILAAGLAMTVHAVPSLS*
Ga0134070_100592911	3300010301	Grasslands Soil	FSRVSFDGAVVRVLPAVSAVVVLALGVAMTLRAVPRVL*
Ga0134088_103699071	3300010304	Grasslands Soil	RRLSFNGRVLSLLPSASALVILAAGLLMTLHALPQVG*
Ga0134109_104575242	3300010320	Grasslands Soil	FRRLSFEGRLIRLLPAVSALVILAAGLAMTLRAVPKVS*
Ga0134084_103203272	3300010322	Grasslands Soil	FRRASFEGRLIRLLPAASALVILAAGLAMTVRALPKVS*
Ga0134062_106345921	3300010337	Grasslands Soil	SAFRRVSFDGTLIRLLPAASALVILAAGLAMTFRALPKVA*
Ga0126379_132561532	3300010366	Tropical Forest Soil	ALSITGVGLAAVVARSAFRRASFEGPLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0134125_121008652	3300010371	Terrestrial Soil	GAFRRFSFDGRVVSLLPTASALVIVAAGLVMTLHALPEVG*
Ga0134126_100916271	3300010396	Terrestrial Soil	FKRLSFEGRALSLLPAASALVILAAGLAMTIHSLPAVR*
Ga0134126_109061011	3300010396	Terrestrial Soil	LAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0134122_113960151	3300010400	Terrestrial Soil	VGLAAVVARSAFRRATFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0151490_17643551	3300011107	Soil	RFSFNGRGLSLLPTASALVILAAGLLMTLHALPQVG*
Ga0120157_10331533	3300011994	Permafrost	IGLAAVLARGAFRRVSFDGWVVSFLPTASALVILAAGLVMTLHALPKVG*
Ga0137388_109765132	3300012189	Vadose Zone Soil	LARGAFRRVSFDGRLVSLLPTASALVILAAGLLMTVHALPKVG*
Ga0137388_110178522	3300012189	Vadose Zone Soil	IGLLAVTARRTFSRLSFESRFVRLLPAASALVIIGLGLAMTARAIPGIA*
Ga0137383_105983982	3300012199	Vadose Zone Soil	GLALAITGVGLLAVLAKSAFRRANFDGRLMRLLPVASAFVILVAGLAMTVRALPKVG*
Ga0137380_103542493	3300012206	Vadose Zone Soil	RRSFSRLSFENRLLRLLPAASALVIIGLGLAMTARALPGIA*
Ga0137380_108588441	3300012206	Vadose Zone Soil	IFKRASFEGRLVRLLPAASALVILAAGLAMTARALPKVH*
Ga0137380_110569922	3300012206	Vadose Zone Soil	VGFDGRVVSLLPTASALVIVAAGLLMTFHALPRVG*
Ga0137377_116971572	3300012211	Vadose Zone Soil	AVFAKQIFKRASFEGRLVRLLPAASALVILVAGLAMTARALPKVG*
Ga0137367_111283041	3300012353	Vadose Zone Soil	FRRASFEGRLVRLLPAASALVILVAGIAMTARALPKVS*
Ga0137366_111716581	3300012354	Vadose Zone Soil	VGLLAVLAKRAFARVSFDRGLVALLPAASALVILLAGVVMTVRALPKVTL*
Ga0137371_108994171	3300012356	Vadose Zone Soil	IFKRASFEGRLVRLLPAASALVILAAGLAMTVRALPKVS*
Ga0137385_110620252	3300012359	Vadose Zone Soil	VLARSAFRRFSFEGRFVSLLPTVSALVILAAGLLMTVHALPRVS*
Ga0157343_10134002	3300012488	Arabidopsis Rhizosphere	AFKRMSFEGRLIRLLPAASALVILAAGLAMTAHAVPKVS*
Ga0157283_101653592	3300012907	Soil	AGLALTITAIGCAAVLARGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS*
Ga0137404_115571871	3300012929	Vadose Zone Soil	AFRRVSFDGRVVSLLPTASALVIVAAGLLMTLHALPRVD*
Ga0134077_104919141	3300012972	Grasslands Soil	LFRRASFEGGLIRLLPAVSALVVLALGLAMTLRALPRVA*
Ga0134077_105129751	3300012972	Grasslands Soil	QIFKRPSFEGPLVRLLPAVSALVILAAGLAMTVRALPKVA*
Ga0164309_104770071	3300012984	Soil	TAFRRVSFDGRLVRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0157372_111924193	3300013307	Corn Rhizosphere	ASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS*
Ga0157372_122021651	3300013307	Corn Rhizosphere	YAKQIFKRASFEGRLVRMLPAASALVILAAGLAMTMRALPKVS*
Ga0167661_10908633	3300015167	Glacier Forefield Soil	VPIGIGLVAIGARRAFSRMSFEGRFVRALPAISALVIFGLGLAMT
Ga0134069_12219052	3300017654	Grasslands Soil	VAVYAKQIFKRASFEGRLVRLLPAASALVILAAGLAMTLRALPKVS
Ga0163161_108966252	3300017792	Switchgrass Rhizosphere	GCAAVLARGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0066667_101486351	3300018433	Grasslands Soil	GVGLLAVLARSTFRRLSFEGSLMRLLPAASALVILAAGVAMTLRAFPKVT
Ga0066662_127390131	3300018468	Grasslands Soil	ARSAFRRLSFEGRLLSLLPAVSALVIVAAGIAMTARALPRLS
Ga0193713_11654562	3300019882	Soil	IGLAAVFARGVFKRLSFEGRALSLLPAASALVILAAGLAMTIHSLPAVR
Ga0210382_104525141	3300021080	Groundwater Sediment	LSFDGRLIRLLPAASALVILVAGLAMTVRALPKVS
Ga0247661_11032382	3300024254	Soil	TAFRRVSFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Ga0207653_104109561	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VARTTFRRVSFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Ga0207645_104615592	3300025907	Miscanthus Rhizosphere	MSPIRLHRLLAAVLARGVFKRLSFEGRALSLLPAASALVILAAGLAMTIHSLPGVR
Ga0207654_102624253	3300025911	Corn Rhizosphere	IGLAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS
Ga0207660_103276113	3300025917	Corn Rhizosphere	LAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS
Ga0207646_107541882	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GAFRRLSFEGRFVSLLPAVSALVILAAGLAMTVHSLPKVR
Ga0207644_112693031	3300025931	Switchgrass Rhizosphere	GLALSITGVGLAAVVARSAFRRASFEGRLVRLLPAASALVILAAGVAMTLRAVPKVS
Ga0207670_116375711	3300025936	Switchgrass Rhizosphere	GLAAVLARTAFRRMSFEGRLVRLLPAVSALVILAAGLAMTVRAVPKVS
Ga0207665_111273442	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LRTTSPTSSPLALSITAIGLLAVLARRAFRRLSFEGGLLRLLPAASAVVILAAGIVMTVHAVPQLA
Ga0207665_112303221	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ARSAFRRFSFEGRLVRLLPTGSALVILVAGLLMTVHALPGVS
Ga0207712_102010681	3300025961	Switchgrass Rhizosphere	FKRASFEGRLVRLLPAASALVILAAGLAMTARALPKVH
Ga0207640_108094272	3300025981	Corn Rhizosphere	GLALSITGIGLAAVLARSAFRRASFDGRLMRLLPAASALVILAAGLAMTLRAVPKVS
Ga0207677_107637162	3300026023	Miscanthus Rhizosphere	RGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0207703_108983701	3300026035	Switchgrass Rhizosphere	VFKRLSFEGRALSLLPAASALVILAAGLAMTIHSLPGVR
Ga0209471_10646783	3300026318	Soil	FNRVRFDGRVIGLLPALSALVILVAGLAMTARAVPKLG
Ga0209056_105060672	3300026538	Soil	ARGVFRRVGFDGRVVSLLPTASALVIVAAGLLMTFHALPRVG
Ga0209805_13228321	3300026542	Soil	GIGLLAVLAKHAFRRGRFDGRLFGLLPAASALVIVVAGIAMTLRAIPKVH
Ga0209474_103436802	3300026550	Soil	GIGLAAVVARSAFRRLSFEGRLLSLLPAVSALVIVAAGIAMTARALPRLS
Ga0209474_104254131	3300026550	Soil	AVLAKHVFRRASFEGRLIRLLPAASALVILAAGLAMTVRALPKVS
Ga0209177_104274932	3300027775	Agricultural Soil	ALSITGVGLAAVVARSAFRRATFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Ga0209811_101252562	3300027821	Surface Soil	LSFEGRALSLLPAASALVIVAAGLAMTIHSLPGVR
Ga0209811_103107652	3300027821	Surface Soil	LARTAFRRVSFDGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Ga0268266_100487271	3300028379	Switchgrass Rhizosphere	VLARGVFKRLSFEGRALSLLPAASALVILAAGLAMTIHSLPAVR
Ga0268265_121736231	3300028380	Switchgrass Rhizosphere	LALTITAIGCAAVLARGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0247828_109471411	3300028587	Soil	VLARGAFRRVSFEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0307321_10201453	3300028704	Soil	VAVFAKRLFRRASFEGRLVRLLPAASALVILAAGLAMTVRALPKVS
Ga0307276_100355451	3300028705	Soil	LSFDGRLVSLLPAASALVILAAGAAMTLHALPKVR
Ga0307276_101234472	3300028705	Soil	SSFEGRLVRLLPAASALVILAAGLAMTARALPKVS
Ga0307291_10468513	3300028707	Soil	FRRVSFEGRLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0307291_11803351	3300028707	Soil	IGLVAVFAKRLFRRASFEGRLVRLLPAASALVILAAGLAMTVRALPKVS
Ga0307293_102666862	3300028711	Soil	LARGAFRRLSFDGRVVSLLPTASALVILAAGLVMTLHALPKVG
Ga0307293_102880652	3300028711	Soil	IGLLAVLARGAFRRFSFDGRVVSLLPTASALVIVAAGLVMTLHALPEVG
Ga0307311_101767941	3300028716	Soil	AVVLARGAFRRFSFDGRVVSLLPIASALVIVAVGLVMTLHALPKVG
Ga0307311_102314061	3300028716	Soil	FRRVSFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS
Ga0307280_100215591	3300028768	Soil	KRVFKRASFEGRLVRLLPAASALVILAAGLAMTARALPKVH
Ga0307323_100344314	3300028787	Soil	FRRLSFEGPVMRLLPAASALVILAAGLAMTAHAVPKVG
Ga0307290_102972682	3300028791	Soil	RLSFDGPAMRLLPAASALVILAAGLAMTVHAVPKVG
Ga0307284_103588592	3300028799	Soil	FGRIGFDGRLVRLLPAASALVILLAGVAMTARAFPKVG
Ga0307310_102261562	3300028824	Soil	LARSAFRRLSFEGRALSLLPAVSALVILAAGVAMTVHALPQVR
Ga0307312_107726391	3300028828	Soil	RLSFEGRALSLLPAVSALVILAAGVAMTVHALPQVR
Ga0307312_111096301	3300028828	Soil	IGLAVVLARGAFRRFSFDGRAVSLLPTASALVIVAVGLVMTLHALPKVG
Ga0307289_103293631	3300028875	Soil	LSFEGRLMRLLPAASALVILAAGVAMTLRAFPKVT
Ga0307286_100450021	3300028876	Soil	ARSAFRRLSFEGRALSLLPAVSALVILAAGVAMTVHALPQVR
Ga0307278_102001951	3300028878	Soil	AKRAFSRLSFQGRVAGLLPAASALVILVAGVAMTLHALPKVS
Ga0307304_102010262	3300028885	Soil	LAAVLARGAFRRVSFDGRVLSLLPTASALVIVAAGVLMTLHALPRVG
Ga0310907_101507051	3300031847	Soil	FRRATFEGRLVRVLPAASALVILAAGLAMTLRAVPKVS
Ga0310885_105789601	3300031943	Soil	VSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0307409_1005997853	3300031995	Rhizosphere	LARGAFRRVSLEGPLVRLLPAASALVILAAGLAMTVRAVPKVS
Ga0308176_119082551	3300031996	Soil	AVLARTAFRRVSFEGRLVRLLPAASALVILAAGVAMTLRAVPKVS
Ga0307471_1022192091	3300032180	Hardwood Forest Soil	FSRVSFEGPLMRALPTVSALVVIGLGVAMTLRAVPKVV
Ga0307471_1042836602	3300032180	Hardwood Forest Soil	VAAVLARGAFRRVSFDGRLVSLLPTASALVILVAGLLMTVHALPRVG
Ga0373948_0033741_886_1041	3300034817	Rhizosphere Soil	TGVGLAAVVARSAFRRATFEGRLVRLLPAASALVILAAGLAMTLRAVPKVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059252

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences